GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002195-TA|BGIBMGA002195-PA|IPR000182|GCN5-related
N-acetyltransferase
         (204 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0362 - 2825880-2826563                                           33   0.16 
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062...    30   1.5  
09_04_0266 + 16240162-16242075                                         29   2.0  
07_03_1560 - 27730241-27730336,27730471-27730644,27730746-277309...    28   4.6  
08_02_0894 + 22346027-22347925                                         27   8.0  

>03_01_0362 - 2825880-2826563
          Length = 227

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 87  AGYALCNRAYSSWTGR-AVYVEDLWVSEXXXXXXXXXXXXXXXXXXXXXXQVTRLDWHVL 145
           AG+ +C   YS++  +  +YVED++V                         + R++W VL
Sbjct: 120 AGFVICFPNYSTFLSKPGLYVEDIFVRAPWRRRGLGRMMLSAVAGKAAELGMGRVEWCVL 179

Query: 146 EDNAPALALYARLGARDL 163
           + N  A+  Y  +GA  L
Sbjct: 180 DWNKNAIDFYEGMGAEVL 197


>02_05_0530 -
           29804939-29805547,29805658-29805885,29805978-29806261,
           29807095-29807199,29807648-29808155
          Length = 577

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 144 VLEDNAPALALYARLGARDLYRSERRLALRLDEPCILAVAAGHLLPSTPPQSGA 197
           V+ED++  LA   R G RDLYR  +R +  L    I  V+   +LP     SGA
Sbjct: 383 VMEDDSGFLAPSTRSGLRDLYREAKRASKLL---VISRVSGQKVLPWMVSTSGA 433


>09_04_0266 + 16240162-16242075
          Length = 637

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 137 VTRLDWHVLEDNAPALALYARLGARDLYRSERRL 170
           V RL+W VLE         AR   R ++ SERRL
Sbjct: 223 VQRLEWEVLEAKIRRWIRAARAAVRGVFASERRL 256


>07_03_1560 -
           27730241-27730336,27730471-27730644,27730746-27730907,
           27730993-27731101,27732268-27732374,27732875-27733141
          Length = 304

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 149 APALALYARLGARDLYRSERRLALRLDEPCILAVAAGHLLPSTPPQS 195
           A  +A +  +GAR+ Y   R +   +    IL  AAG LL  T P +
Sbjct: 42  AAGIARWEPMGAREYYDYRRAIYGDITHKAILVDAAGTLLAPTEPMA 88


>08_02_0894 + 22346027-22347925
          Length = 632

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 137 VTRLDWHVLEDNAPALALYARLGARDLYRSERRL 170
           V RL+W  LE         AR   R ++ SERRL
Sbjct: 215 VQRLEWKALEAKIRRWIRAARAAVRGVFASERRL 248


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.138    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,403,976
Number of Sequences: 37544
Number of extensions: 134229
Number of successful extensions: 381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 5
length of query: 204
length of database: 14,793,348
effective HSP length: 79
effective length of query: 125
effective length of database: 11,827,372
effective search space: 1478421500
effective search space used: 1478421500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)