GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002195-TA|BGIBMGA002195-PA|IPR000182|GCN5-related
N-acetyltransferase
         (204 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81052-3|CAB02871.1|  160|Caenorhabditis elegans Hypothetical pr...    48   4e-06

>Z81052-3|CAB02871.1|  160|Caenorhabditis elegans Hypothetical
           protein D2023.4 protein.
          Length = 160

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 29/101 (28%), Positives = 46/101 (45%)

Query: 79  IAELDGQVAGYALCNRAYSSWTGRAVYVEDLWVSEXXXXXXXXXXXXXXXXXXXXXXQVT 138
           IA +  + AG  L   AYS+W G+ +++EDL++                         + 
Sbjct: 54  IAFIGEEPAGMNLFYYAYSTWVGQYLHMEDLYIRPQFRRMGLARTLWKKLAELARDKGIV 113

Query: 139 RLDWHVLEDNAPALALYARLGARDLYRSERRLALRLDEPCI 179
           RL+W VL+ N  A+ALY  +   +L +SE     R+D   I
Sbjct: 114 RLEWAVLDWNKNAIALYDTVDYVNLTKSEGWFTFRMDGAAI 154


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.138    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,497,970
Number of Sequences: 27539
Number of extensions: 99815
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 1
length of query: 204
length of database: 12,573,161
effective HSP length: 78
effective length of query: 126
effective length of database: 10,425,119
effective search space: 1313564994
effective search space used: 1313564994
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)