GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002194-TA|BGIBMGA002194-PA|undefined
         (122 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    24   0.36 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   3.4  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 0.36
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 8   SSVGQQNQNINTHMARDCAESD 29
           SS GQQN N +++   DC++ +
Sbjct: 80  SSEGQQNSNYSSNSKPDCSKGN 101


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 72  ITSALPHQRISPGSPRAISDPVLF-STRHTLAAPRVSL 108
           + + LPHQ + P       +P LF   R    AP + +
Sbjct: 11  LPTVLPHQEVPPPFGYYHEEPPLFYEERPDFVAPYIKV 48


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,502
Number of Sequences: 317
Number of extensions: 603
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 122
length of database: 114,650
effective HSP length: 50
effective length of query: 72
effective length of database: 98,800
effective search space:  7113600
effective search space used:  7113600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)