GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002194-TA|BGIBMGA002194-PA|undefined
         (122 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   1.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   1.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   1.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   2.5  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   3.4  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    24   5.9  
SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    24   7.8  

>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 71  PITSALPHQRISPGSPRAISDPVLFSTRHTLAAPRVSLATVVHARTKP 118
           PI SAL      P S  + S P L + +H L++P+ S A +  + + P
Sbjct: 121 PIVSAL-----EPPSSNSSSSPQLQNLKHQLSSPQPSRAPIDRSSSNP 163


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 92  PVLFSTRHTLAAPRVSLATVVHA 114
           P++ ST H L +P+  LA  +HA
Sbjct: 789 PIVNSTHHLLPSPQGELAPAIHA 811


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 9   SVGQQNQNINTHMARDCAESDFALS-NRGMIKQRDSR 44
           S+G +NQ+  + +A + AE+D  +S N G   Q+ S+
Sbjct: 525 SIGSRNQSTPSTLAPNVAETDALVSENTGAASQKTSK 561


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 73  TSALPHQRISPGS---PRAISDPVLFSTRHTLAAPRVSLATVVHARTKPPSV 121
           T +  H   S GS   P +IS+   FST+ +       +AT + +   PPSV
Sbjct: 519 TDSNTHMLPSQGSLLPPSSISETKSFSTKASTPLSTDDIATPLSSAPNPPSV 570


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)

Query: 87  RAISDPVLFSTRHTLAAPRVSLATVVHARTKPPSV 121
           R +S PVL ++R     P +SL+     RT+PPS+
Sbjct: 810 RDMSVPVLTTSR----MPTISLSKAKELRTRPPSL 840


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 69  QRPITSALPHQRI-SPGSPRAISDPVLFS 96
           Q  +   L H  + SP  PR++S P  FS
Sbjct: 282 QSNVPPQLSHSSVPSPAPPRSVSQPTYFS 310


>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 71  PITSALPHQRISPGSPRAISDPVLFSTRHTLAAP 104
           P    +PH+ +S GSP    +P L + R + ++P
Sbjct: 88  PSPDTIPHRVVSAGSPN--KEPSLHTKRPSESSP 119


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,723
Number of Sequences: 5004
Number of extensions: 10994
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 7
length of query: 122
length of database: 2,362,478
effective HSP length: 65
effective length of query: 57
effective length of database: 2,037,218
effective search space: 116121426
effective search space used: 116121426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)