GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002194-TA|BGIBMGA002194-PA|undefined
         (122 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296     26   7.2  
11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143...    26   9.6  
07_03_1107 - 24024387-24024497,24025799-24026410                       26   9.6  
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990...    26   9.6  
02_02_0487 - 10860693-10861931                                         26   9.6  

>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
          Length = 247

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%)

Query: 16  NINTHMARDCAESDFALSNRG 36
           N++ H+AR+C +SD A++ RG
Sbjct: 166 NVSGHLARECPKSD-AINERG 185


>11_01_0180 -
           1431758-1431838,1431975-1432061,1432180-1432230,
           1432275-1432367,1432496-1432568,1432657-1432751,
           1433428-1433515,1433647-1433936
          Length = 285

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 80  RISPGSPRAISDPVLFSTRHTLAAPRVSL-AT--VVHAR 115
           R +P +PR  + P+L S R TL +   SL AT  VVH R
Sbjct: 14  RSTPPTPRPTAPPLLHSRRLTLPSRLASLPATIAVVHPR 52


>07_03_1107 - 24024387-24024497,24025799-24026410
          Length = 240

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 71  PITSALPHQRISPGSPRAISDPVLFSTRHTLAAPRVSLATVVHARTKP 118
           P T A P    +P +P     P   ST+    AP+ + AT   A + P
Sbjct: 66  PTTPATPAPAEAPTTPAPTKAPPTKSTKAPAPAPKAAKATPPPASSPP 113


>03_02_0619 +
           9904405-9904586,9905315-9906764,9907320-9907509,
           9909578-9910164
          Length = 802

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 16  NINTHMARDCAESDFALSNRGMI 38
           +IN +  R+  ++DF+L NRG +
Sbjct: 263 HINKNFRREMQQADFSLQNRGRV 285


>02_02_0487 - 10860693-10861931
          Length = 412

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 9/51 (17%)

Query: 80  RISPGSPRAISD-PVLFSTRH--TLAA------PRVSLATVVHARTKPPSV 121
           R++PGS  +  D PV+ S R+   LAA      PRVS+ + +H    PP++
Sbjct: 108 RLAPGSSGSGPDAPVILSCRNGRVLAAEFPPDGPRVSIISPMHPARHPPAL 158


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,932
Number of Sequences: 37544
Number of extensions: 75929
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 5
length of query: 122
length of database: 14,793,348
effective HSP length: 74
effective length of query: 48
effective length of database: 12,015,092
effective search space: 576724416
effective search space used: 576724416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)