GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002194-TA|BGIBMGA002194-PA|undefined
         (122 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88184-1|AAK31517.1|  476|Caenorhabditis elegans C-type lectin p...    26   8.6  

>U88184-1|AAK31517.1|  476|Caenorhabditis elegans C-type lectin
          protein 19 protein.
          Length = 476

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 72 ITSALPHQRISPGSPRAISDP 92
          ITS LP++  +PGSP     P
Sbjct: 31 ITSTLPYEDTTPGSPATSESP 51


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,807
Number of Sequences: 27539
Number of extensions: 63790
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 1
length of query: 122
length of database: 12,573,161
effective HSP length: 73
effective length of query: 49
effective length of database: 10,562,814
effective search space: 517577886
effective search space used: 517577886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)