GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002193-TA|BGIBMGA002193-PA|undefined
         (52 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       19   5.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          18   6.6  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    18   8.7  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 18.6 bits (36), Expect = 5.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 10  VCIIVPEWLQVK 21
           VC+ +PE L +K
Sbjct: 120 VCLAIPESLVIK 131


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 18.2 bits (35), Expect = 6.6
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 15  PEWLQVKDLWLD 26
           P W Q   +WL+
Sbjct: 654 PRWRQTLAMWLN 665


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 17.8 bits (34), Expect = 8.7
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 13  IVPEWLQVKDLWLDSTDTQLSV 34
           +V +W+  + ++   T  +LSV
Sbjct: 158 VVTDWVNFERIYYKLTKKKLSV 179


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.137    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,288
Number of Sequences: 317
Number of extensions: 285
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 52
length of database: 114,650
effective HSP length: 33
effective length of query: 19
effective length of database: 104,189
effective search space:  1979591
effective search space used:  1979591
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.8 bits)
S2: 34 (17.8 bits)