GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002193-TA|BGIBMGA002193-PA|undefined
         (52 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    24   2.8  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    24   2.8  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    23   3.7  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    23   6.5  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    23   6.5  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    22   8.5  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    22   8.5  

>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 927

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 19 QVKDLWLDSTDTQLSVRKDGHFKTSL 44
          ++KD+    TDTQL  +   H K SL
Sbjct: 62 RIKDIVQRPTDTQLKGQDSNHKKASL 87


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 2   ERIRMVSMVCIIVPEWLQVKDLWLDSTDTQL-SVRK 36
           E +   ++VC + P W+++    L   + Q+ S+RK
Sbjct: 198 ETVEPCAVVCRMAPSWIRIGTFDLQGINNQIESLRK 233


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 31  QLSVRKDGHFKTSLDWGAF 49
           Q + +KDGH+ T +D+  F
Sbjct: 606 QTAFKKDGHWHTHIDYPKF 624


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 1   MERIRM-VSMVCIIVPEWLQVKDLWLDSTDTQLSVR 35
           ME I++ V  V IIV EW+    L+    DT L  R
Sbjct: 112 MEEIQLPVEKVDIIVSEWMGYFLLYESMLDTVLVAR 147


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 25  LDSTDTQLSVRKDGHFKTSLDW 46
           LD T TQ +V K   F  + DW
Sbjct: 586 LDDTPTQSNVEKVDRFLENHDW 607


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 24  WLDSTDTQLSVRKDGHFKTSLD--WG 47
           + D  D ++  +KD  F TSL   WG
Sbjct: 187 YYDDLDDEIDQKKDAGFDTSLTDLWG 212


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)

Query: 3   RIRMVSMVCIIVPEWLQVKDLW 24
           R+RM  + C     WL V D W
Sbjct: 182 RVRMCELACERTSSWLMV-DAW 202


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.137    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,207
Number of Sequences: 5004
Number of extensions: 5236
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 7
length of query: 52
length of database: 2,362,478
effective HSP length: 33
effective length of query: 19
effective length of database: 2,197,346
effective search space: 41749574
effective search space used: 41749574
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)