GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002193-TA|BGIBMGA002193-PA|undefined
         (52 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0683 - 18653676-18653720,18653847-18654146                       27   1.9  
05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157     26   3.2  
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818...    25   7.5  

>04_03_0683 - 18653676-18653720,18653847-18654146
          Length = 114

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 12 IIVPEWLQVKDLWLDST-DTQLSVRKDGH 39
          + VP WL+V  L+ D      +S+R +GH
Sbjct: 69 VFVPHWLKVHKLYKDGDWKVSISIRANGH 97


>05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157
          Length = 591

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 2   ERIRMVSMVCIIVPEWLQVKDLWLDSTDTQ 31
           ERI  +++ C  VP+W +  D W+D   +Q
Sbjct: 310 ERIMALAVPCSAVPDW-ESDDGWIDVMSSQ 338


>05_06_0219 +
           26479708-26479710,26481045-26481173,26481675-26481818,
           26481936-26482081,26482185-26482341,26482489-26482547,
           26482787-26482946,26483020-26483169,26483279-26483415,
           26483518-26483664,26483733-26483834,26483917-26483974,
           26484084-26484185,26484322-26484379,26484717-26484775,
           26486488-26486525,26486688-26486814,26486900-26487067,
           26487879-26488010,26488089-26488198,26488273-26488333,
           26488761-26488938,26489041-26489246,26489431-26489550,
           26489631-26489729,26489968-26490156,26490291-26490430,
           26491149-26491316,26491438-26491605,26491764-26491931,
           26492250-26492417,26492533-26492700,26492853-26493020,
           26493118-26493285,26493471-26493638,26493756-26493920,
           26494679-26494850,26495012-26495175,26495296-26495405,
           26495481-26495596,26495686-26495766,26495849-26496034,
           26496203-26496547,26496637-26496777,26496869-26496916,
           26497162-26497242,26497350-26497406,26497495-26497575,
           26497675-26497757,26497842-26497968
          Length = 2159

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 4   IRMVSMVCIIVPEWLQVKDLWLDSTDTQLSVRKDGHFKTSLD 45
           I + S+VC     WL  ++  + STD  +  RK G     LD
Sbjct: 506 IGICSVVCEYNTVWLVTENCKVGSTDCYVLARKPGGIVALLD 547


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.137    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,121
Number of Sequences: 37544
Number of extensions: 34502
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 3
length of query: 52
length of database: 14,793,348
effective HSP length: 33
effective length of query: 19
effective length of database: 13,554,396
effective search space: 257533524
effective search space used: 257533524
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)