GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002193-TA|BGIBMGA002193-PA|undefined
         (52 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)                26   3.7  
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)              26   5.0  
SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  

>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
          Length = 1042

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 31 QLSVRKDGHFKTSLDWGAFQGL 52
          + S+   GH + S+DW AF+GL
Sbjct: 67 EASLFSGGHKRISVDWVAFEGL 88


>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 26  DSTDTQLSVRKDGHFKTSLD 45
           DS D   SV KDG F+T+ D
Sbjct: 454 DSVDFDTSVHKDGMFETTFD 473


>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
          Length = 758

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 16  EWLQVKDLWLDSTDTQLSVRKDGHFKTSLDWGA 48
           EW  +    +DS DT L +     F+ + DW A
Sbjct: 384 EWFNIGLTIIDSLDTMLLLNLKDEFREARDWVA 416


>SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 38  GHFKTSLDWGAFQGL 52
           GH + S+DW AF+GL
Sbjct: 190 GHKRISVDWVAFEGL 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.137    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,342
Number of Sequences: 59808
Number of extensions: 38144
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 4
length of query: 52
length of database: 16,821,457
effective HSP length: 32
effective length of query: 20
effective length of database: 14,907,601
effective search space: 298152020
effective search space used: 298152020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)