GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002193-TA|BGIBMGA002193-PA|undefined
         (52 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK054663-1|BAB70786.1|  820|Homo sapiens umor (LRPDIT) mRNA.  pr...    27   7.2  
AF283374-1|AAL38108.1| 1731|Homo sapiens candidate tumor suppres...    27   7.2  
AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein...    27   7.2  
AC010740-1|AAY14689.1|  862|Homo sapiens unknown protein.              27   7.2  

>AK054663-1|BAB70786.1|  820|Homo sapiens umor (LRPDIT) mRNA.
           protein.
          Length = 820

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 16  EWLQVKDLWLDSTDTQLSVRK-DGHFKTSLDWGAFQ 50
           +W+     W+DS   Q+ V K DG  +T+L  GA +
Sbjct: 526 DWIAGNIYWIDSNLDQIEVAKLDGSLRTTLIAGAME 561


>AF283374-1|AAL38108.1| 1731|Homo sapiens candidate tumor suppressor
           protein protein.
          Length = 1731

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 16  EWLQVKDLWLDSTDTQLSVRK-DGHFKTSLDWGAFQ 50
           +W+     W+DS   Q+ V K DG  +T+L  GA +
Sbjct: 419 DWIAGNIYWIDSNLDQIEVAKLDGSLRTTLIAGAME 454


>AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein
            receptor related protein-deleted in tumor protein.
          Length = 4599

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 16   EWLQVKDLWLDSTDTQLSVRK-DGHFKTSLDWGAFQ 50
            +W+     W+DS   Q+ V K DG  +T+L  GA +
Sbjct: 1343 DWIAGNIYWIDSNLDQIEVAKLDGSLRTTLIAGAME 1378


>AC010740-1|AAY14689.1|  862|Homo sapiens unknown protein.
          Length = 862

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 16  EWLQVKDLWLDSTDTQLSVRK-DGHFKTSLDWGAFQ 50
           +W+     W+DS   Q+ V K DG  +T+L  GA +
Sbjct: 419 DWIAGNIYWIDSNLDQIEVAKLDGSLRTTLIAGAME 454


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.325    0.137    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,461,344
Number of Sequences: 224733
Number of extensions: 187535
Number of successful extensions: 289
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 4
length of query: 52
length of database: 73,234,838
effective HSP length: 32
effective length of query: 20
effective length of database: 66,043,382
effective search space: 1320867640
effective search space used: 1320867640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)