GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002191-TA|BGIBMGA002191-PA|undefined
         (58 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    32   0.010
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   0.39 
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    23   3.6  
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    23   3.6  
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    23   3.6  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    23   6.4  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    22   8.4  

>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 31.9 bits (69), Expect = 0.010
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 3   QEASATGCCRLDFHVLEWNP-ACSFYESKGAVNLTNKEQWCYYRLTGDALRDFA 55
           +E+   G  RLD+ VL+WN  A   YE  GA  +     W   R+TG+ L+  A
Sbjct: 111 RESLRIGGRRLDWVVLDWNQRAIEVYEKAGAQKVGG---WSMMRVTGENLKALA 161


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 0.39
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 16  HVLEWNPACSFYESKGAVNLTNKEQWCYYRLTGDALRDFA 55
           H+LE   AC+  ES+       KE     R T  A+RD A
Sbjct: 430 HLLEMGEACTSRESQKTRKKNLKENIRKQRTTSTAIRDIA 469


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 24  CSFYESKGAVNLTNKEQWCYYRLTGDALRDFAKD 57
           CS +E+   V L +++ W ++ L   +  D A D
Sbjct: 146 CSRHEALNEVLLNSRDFWTFFSLIQASSFDMASD 179


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
          S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 23 ACSFYESKGAVNLTNKEQWCYYRLTGDAL 51
          AC   +S+G +       W YY LT + +
Sbjct: 45 ACQSLDSRGYLKTRYNWGWFYYTLTNEGV 73


>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
          S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 23 ACSFYESKGAVNLTNKEQWCYYRLTGDAL 51
          AC   +S+G +       W YY LT + +
Sbjct: 45 ACQSLDSRGYLKTRYNWGWFYYTLTNEGV 73


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 28  ESKGAVNLTNKEQWCYYRLTGD 49
           ESKGAV L ++     + LTGD
Sbjct: 601 ESKGAVELCHRAGIRVHMLTGD 622


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 12/46 (26%), Positives = 14/46 (30%)

Query: 8   TGCCRLDFHVLEWNPACSFYESKGAVNLTNKEQWCYYRLTGDALRD 53
           TG  RL  +   WNPA              K   C Y      + D
Sbjct: 619 TGSTRLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLD 664


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,743
Number of Sequences: 5004
Number of extensions: 7671
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 7
length of query: 58
length of database: 2,362,478
effective HSP length: 39
effective length of query: 19
effective length of database: 2,167,322
effective search space: 41179118
effective search space used: 41179118
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 45 (22.2 bits)