GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002191-TA|BGIBMGA002191-PA|undefined
         (58 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629...    26   3.4  
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198...    26   4.4  
09_04_0516 - 18246439-18246582,18246763-18246899,18247067-182470...    25   5.9  

>09_04_0518 -
          18261420-18261953,18262054-18262626,18262736-18262948,
          18263379-18263510,18263591-18263731,18263899-18264120
          Length = 604

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 11 CRLDFHVLEWNPACSFYESKGAVNLTNKEQWCYYRLTGDALRD 53
          CR  +++   +PA  F ES+G  NL + ++W + +   + +R+
Sbjct: 41 CRR-YNIEPRSPAAYFSESEGHHNLCSPKEWSFIKNLYEEMRE 82


>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
            1987805-1988305,1989010-1990016,1990131-1990781,
            1991337-1991633,1991735-1992013,1993070-1993198,
            1993291-1993491,1993651-1993793,1993878-1994190,
            1994349-1994488,1995320-1995398,1995484-1995753,
            1996208-1996425,1996521-1996632
          Length = 1623

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 1    MFQEASATGCCRLDFHVLEWNPACSFYESKGAVNLTNKEQWCYYR-----LTGDALRDF 54
            +FQ+      C    +V E+   CS Y ++  V L+  +   Y+R     ++G+ALR F
Sbjct: 1136 LFQKIEGVEVCLFGMYVQEFGAECS-YPNQRRVYLSYLDSVKYFRPEIRTVSGEALRTF 1193


>09_04_0516 -
          18246439-18246582,18246763-18246899,18247067-18247097,
          18248097-18248194,18248222-18248291,18248704-18248835,
          18249213-18249386
          Length = 261

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 22 PACSFYESKGAVNLTNKEQWCYYRLTGD 49
          PA  F ES+G  NL   ++W + ++  D
Sbjct: 35 PAAFFVESEGHHNLCTPKEWSFIKILID 62


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.136    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,854
Number of Sequences: 37544
Number of extensions: 49853
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 3
length of query: 58
length of database: 14,793,348
effective HSP length: 38
effective length of query: 20
effective length of database: 13,366,676
effective search space: 267333520
effective search space used: 267333520
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)