GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002191-TA|BGIBMGA002191-PA|undefined
         (58 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23369| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-18)        31   0.17 
SB_57342| Best HMM Match : Arf (HMM E-Value=0)                         31   0.17 
SB_32080| Best HMM Match : Plasmid_stabil (HMM E-Value=5.7)            28   0.91 
SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)                  26   4.8  
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)                   25   8.4  

>SB_23369| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-18)
          Length = 310

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 3   QEASATGCCRLDFHVLEWN-PACSFYESKGAVNLTNKEQWCYYRLTGDAL 51
           + A+  GC ++ + V+ WN    SFYE+ GA     K++W  + L  +A+
Sbjct: 193 KHATEQGCKKISWTVIGWNEKGISFYEALGA----TKDKWEQFSLKEEAI 238


>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
          Length = 457

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 3   QEASATGCCRLDFHVLEWN-PACSFYESKGAVNLTNKEQWCYYRLTGDAL 51
           + A+  GC ++ + V+ WN    SFYE+ GA     K++W  + L  +A+
Sbjct: 412 KHATEQGCKKISWTVIGWNEKGISFYEALGA----TKDKWEQFSLKEEAI 457


>SB_32080| Best HMM Match : Plasmid_stabil (HMM E-Value=5.7)
          Length = 284

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 16 HVLEWNPACSFYESKGAVNLTNKEQWCYYRLTGDALRDFAKD 57
          H   W P+  F+E  G  NL   ++   Y +      DF K+
Sbjct: 30 HTKRWRPSTDFFEPDGQYNLVVIDKRSRYPVVEKDYEDFGKE 71


>SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)
          Length = 1155

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 2   FQEASATGCCRLDFHVLEWNPACSFYESKGAVNL 35
           F +A+ TGC  L   +    P     + KGA+NL
Sbjct: 377 FGQANRTGCSSLSTDIAGGAPRAENLKGKGALNL 410


>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
          Length = 380

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 12  RLDFHVLEWNPACSFYESKGAVNLTNKEQW 41
           ++D  + EW   C FYES     L  +++W
Sbjct: 319 KVDIIISEWMGYCLFYESMLDTVLYARDKW 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.136    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,587
Number of Sequences: 59808
Number of extensions: 58988
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 5
length of query: 58
length of database: 16,821,457
effective HSP length: 38
effective length of query: 20
effective length of database: 14,548,753
effective search space: 290975060
effective search space used: 290975060
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)