GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002191-TA|BGIBMGA002191-PA|undefined
         (58 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81052-3|CAB02871.1|  160|Caenorhabditis elegans Hypothetical pr...    43   3e-05
U49941-4|AAP46282.1|  271|Caenorhabditis elegans Hypothetical pr...    26   2.7  
U49941-3|AAP46281.1|  451|Caenorhabditis elegans Hypothetical pr...    26   2.7  
U49941-2|AAB53873.1|  757|Caenorhabditis elegans Hypothetical pr...    26   2.7  
AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical...    26   2.7  
Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical pr...    26   3.6  
AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical ...    26   3.6  
AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchang...    25   6.3  
AF016420-4|AAB65308.1|  703|Caenorhabditis elegans Na/ca exchang...    25   6.3  
AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical ...    25   8.4  

>Z81052-3|CAB02871.1|  160|Caenorhabditis elegans Hypothetical
           protein D2023.4 protein.
          Length = 160

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 9   GCCRLDFHVLEWNP-ACSFYESKGAVNLTNKEQWCYYRLTGDALRDFAKD 57
           G  RL++ VL+WN  A + Y++   VNLT  E W  +R+ G A+  FA +
Sbjct: 111 GIVRLEWAVLDWNKNAIALYDTVDYVNLTKSEGWFTFRMDGAAINKFADE 160


>U49941-4|AAP46282.1|  271|Caenorhabditis elegans Hypothetical
           protein K10B3.6c protein.
          Length = 271

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 35  LTNKEQWCYYRLTGDALRDFAK 56
           L  KE   Y+R+ G+AL+ FAK
Sbjct: 228 LNEKESVVYFRIHGEALKFFAK 249


>U49941-3|AAP46281.1|  451|Caenorhabditis elegans Hypothetical
           protein K10B3.6b protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 35  LTNKEQWCYYRLTGDALRDFAK 56
           L  KE   Y+R+ G+AL+ FAK
Sbjct: 228 LNEKESVVYFRIHGEALKFFAK 249


>U49941-2|AAB53873.1|  757|Caenorhabditis elegans Hypothetical
           protein K10B3.6a protein.
          Length = 757

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 35  LTNKEQWCYYRLTGDALRDFAK 56
           L  KE   Y+R+ G+AL+ FAK
Sbjct: 228 LNEKESVVYFRIHGEALKFFAK 249


>AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical
           protein Y113G7B.17 protein.
          Length = 348

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 9   GCCRLDFHVLEWNPACSFYESKGAVNLTNKEQW 41
           G  ++D  + EW   C FYES     L  +++W
Sbjct: 129 GIEKVDIIISEWMGYCLFYESMLNTVLVARDRW 161


>Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical
          protein F22E12.1 protein.
          Length = 763

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 9  GCCRLDFHVLEWNPACSFYESKGAVNLTNKEQWCYYR 45
          GC  ++   L  NP C+ +  +G   L    +W Y R
Sbjct: 10 GCTAVNSQQLLSNPKCNHWPDRGTCELDFHVKWYYDR 46


>AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical
          protein F22E12.1 protein.
          Length = 763

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 9  GCCRLDFHVLEWNPACSFYESKGAVNLTNKEQWCYYR 45
          GC  ++   L  NP C+ +  +G   L    +W Y R
Sbjct: 10 GCTAVNSQQLLSNPKCNHWPDRGTCELDFHVKWYYDR 46


>AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchangers
           protein 9 protein.
          Length = 651

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 11  CRLDFHVLEWN 21
           C  +FHVLEWN
Sbjct: 641 CLAEFHVLEWN 651


>AF016420-4|AAB65308.1|  703|Caenorhabditis elegans Na/ca exchangers
           protein 8 protein.
          Length = 703

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 11  CRLDFHVLEWN 21
           C  +FHVLEWN
Sbjct: 693 CLAEFHVLEWN 703


>AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical
           protein Y70G10A.3 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)

Query: 6   SATGCCRLDFHV-LEWNPAC 24
           S +  C  D H  +EWNP C
Sbjct: 448 SISSTCNADCHCKMEWNPVC 467


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.136    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,766
Number of Sequences: 27539
Number of extensions: 42259
Number of successful extensions: 97
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 10
length of query: 58
length of database: 12,573,161
effective HSP length: 39
effective length of query: 19
effective length of database: 11,499,140
effective search space: 218483660
effective search space used: 218483660
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 51 (24.6 bits)