Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002190-TA|BGIBMGA002190-PA|IPR000182|GCN5-related
N-acetyltransferase
         (112 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    52   3e-08
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   1.2  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    24   5.0  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    24   6.6  
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar...    23   8.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    23   8.7  

>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 51.6 bits (118), Expect = 3e-08
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 6   RLLQELADYEKMSDGPKLSIKDL-VHDGFEKQPPEFFCKVAEKHKENILGYAIYFPVYST 64
           + ++ELA++EK  D  + +I +L V  GF  +       V  +  +   G AIYF  +ST
Sbjct: 19  QFIKELAEFEKCEDQVEATIPNLEVAFGFIDEVTPVAYGVFIEENDQPAGMAIYFLNFST 78

Query: 65  WEGRA-LMLEDLYVRMNERRRGVGRLLFDAVAKVFGQLG 102
           W  R  + LEDLYVR   R +G G  L   +A+   ++G
Sbjct: 79  WTSRVGIYLEDLYVRPQFRGKGYGSYLLSYLARESLRIG 117


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 54   GYAIYFPVYSTWE 66
            GY+IYFP+Y  W+
Sbjct: 1138 GYSIYFPMYIDWK 1150


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 11  LADYEKMSDGPKLSIKDLVHDGFEKQPPEFFCKVAEKHKENILGY 55
           L D+        +S KD   +G  K    +  K A++HKE+I  Y
Sbjct: 245 LGDWNGAGCHTNVSTKDTRAEGGIKAIESYLEKFAKRHKEHIAVY 289


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query: 2   IKFMRLLQELADYEKMSDGPKLSI 25
           ++ + L+Q L D+EK+ D P+L +
Sbjct: 457 LRAVLLVQSLPDFEKLVDIPRLRL 480


>SPAC1071.09c |||DNAJ domain protein, DNAJC9
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 80  NERRRGVGRLLFDAVAKVFGQLGNTESHMHID 111
           +E ++   R+ FD VA  +G L + +   H D
Sbjct: 65  DEEKKVEARIEFDKVAIAYGVLSDKKRRKHYD 96


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 15 EKMSDGPKLSIKDLVHDGFEKQPPEFFCKVAEKHKE 50
          +K+ D  K  I++ VH          +   AEKHKE
Sbjct: 42 QKLVDSTKDIIENKVHGNILAATISLWTHAAEKHKE 77


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.141    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,596
Number of Sequences: 5004
Number of extensions: 20579
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 6
length of query: 112
length of database: 2,362,478
effective HSP length: 64
effective length of query: 48
effective length of database: 2,042,222
effective search space: 98026656
effective search space used: 98026656
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)