Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002190-TA|BGIBMGA002190-PA|IPR000182|GCN5-related
N-acetyltransferase
         (112 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0362 - 2825880-2826563                                           46   7e-06
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665...    28   1.5  
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6...    28   1.5  
07_01_0653 - 4897188-4897270,4897405-4897630,4897750-4897793,489...    27   4.5  
08_02_1572 - 27952418-27952727,27952872-27953133,27954018-279541...    26   7.8  
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597...    26   7.8  
07_01_0119 - 908600-909592,909685-909885                               26   7.8  

>03_01_0362 - 2825880-2826563
          Length = 227

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 54  GYAIYFPVYSTWEGR-ALMLEDLYVRMNERRRGVGRLLFDAVAKVFGQLG 102
           G+ I FP YST+  +  L +ED++VR   RRRG+GR++  AVA    +LG
Sbjct: 121 GFVICFPNYSTFLSKPGLYVEDIFVRAPWRRRGLGRMMLSAVAGKAAELG 170


>07_03_1780 -
           29465873-29466130,29466236-29466335,29466473-29466559,
           29466682-29467000,29467097-29468567
          Length = 744

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 78  RMNERRRGVGRLLFDAVAKVFGQLG 102
           R   RR+G+ RLL D + K+ G++G
Sbjct: 641 RFARRRQGMCRLLMDEIQKLLGEMG 665


>02_01_0001 -
           3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
           6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
           7538-7667,7753-8255
          Length = 577

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 44  VAEKHKENILGYAIYFPVYSTWEGRALMLEDLYVRMNERRRGVGRLLFDAVAKVFG 99
           V ++ K+ +L     + +Y+ W G    LE  Y ++ +  RG+  L+   +AK+ G
Sbjct: 436 VLDESKDALLEVCSSWKIYAPWCGHCQELEPTYNKLGKHLRGIDSLV---IAKMDG 488


>07_01_0653 -
          4897188-4897270,4897405-4897630,4897750-4897793,
          4898281-4898500
          Length = 190

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 8  LQELADYEKMSDGPKLSIKDLVHDGFEKQPPEFFCK 43
          LQ L+ + +  DG +   KD    G  KQ  E+ CK
Sbjct: 59 LQPLSGFLRAEDGRQPRAKDFKDSGKSKQETEWACK 94


>08_02_1572 -
          27952418-27952727,27952872-27953133,27954018-27954107,
          27955653-27955695
          Length = 234

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 46 EKHKENILGYAIYFPVYSTWEGRAL 70
          +KH+EN LG++I  PV    +G+ L
Sbjct: 24 DKHRENYLGHSIKAPVGRWQKGKDL 48


>08_01_0682 +
           5974622-5974745,5976182-5976371,5976953-5977024,
           5977482-5977553,5977688-5977759,5977842-5977913,
           5978690-5978761,5978855-5978926,5979017-5979091,
           5979529-5979594,5979821-5979885,5979975-5980354,
           5980438-5980636,5980713-5980763,5980955-5981073,
           5981190-5981400,5981524-5981755,5981842-5981992,
           5982089-5982447,5982750-5982768
          Length = 890

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 59  FPVYSTWEGRALMLEDLYVR--MNER----RRGVGRLLFDAVAKVFGQL 101
           +P   TWE     + D+YV+  + E+    R+ VG   F AV K++  +
Sbjct: 425 YPDSKTWESTGRRIFDIYVQGVLKEKNFDIRKAVGGKSFTAVNKIYNTI 473


>07_01_0119 - 908600-909592,909685-909885
          Length = 397

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 75  LYVRMNERRRGVGRLLFDAVAKVFGQLGNTESHMHID 111
           L V    RRRG+GR L + + + F ++G   +++  D
Sbjct: 108 LRVSPRHRRRGIGRRLVERMEEWFREMGAEYAYVATD 144


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.141    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,266
Number of Sequences: 37544
Number of extensions: 123112
Number of successful extensions: 230
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 7
length of query: 112
length of database: 14,793,348
effective HSP length: 73
effective length of query: 39
effective length of database: 12,052,636
effective search space: 470052804
effective search space used: 470052804
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)