GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002190-TA|BGIBMGA002190-PA|IPR000182|GCN5-related
N-acetyltransferase
         (112 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23369| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-18)        45   1e-05
SB_57342| Best HMM Match : Arf (HMM E-Value=0)                         45   1e-05
SB_20189| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.28 
SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)                   31   0.28 
SB_6212| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.66 
SB_57571| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.6  
SB_9129| Best HMM Match : efhand (HMM E-Value=0.075)                   27   4.6  

>SB_23369| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-18)
          Length = 310

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 49  KENILGYAIYFPVYSTWEGRALMLEDLYVRMNERRRGVGRLLFDAVAK 96
           +  ++G+A+  P YS + GR L LE +YV    R RG+G+ L  A+AK
Sbjct: 146 ERQLVGFALVNPGYSCYSGRRLRLEAIYVEDKYRGRGIGKALMKAIAK 193


>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
          Length = 457

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 49  KENILGYAIYFPVYSTWEGRALMLEDLYVRMNERRRGVGRLLFDAVAK 96
           +  ++G+A+  P YS + GR L LE +YV    R RG+G+ L  A+AK
Sbjct: 365 ERQLVGFALVNPGYSCYSGRRLRLEAIYVEDKYRGRGIGKALMKAIAK 412


>SB_20189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 39  EFFCKVAEKHKENILGYAIYFPVYSTWEGRALMLEDLY 76
           EFFC VA K++    G +  F    T+ G+ L LE+ +
Sbjct: 197 EFFCNVASKYRATPPGTSTCFERLKTFVGQTLKLEECF 234


>SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)
          Length = 1445

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 39  EFFCKVAEKHKENILGYAIYFPVYSTWEGRALMLEDLY 76
           EFFC VA K++    G +  F    T+ G+ L LE+ +
Sbjct: 211 EFFCNVASKYRATPPGTSTCFERLKTFVGQTLKLEECF 248


>SB_6212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 53 LGYAIYFPVYSTWEGRALMLEDLYVRMNERRRGVGRLLFDAVAK 96
          +G  IY   +S + GR L +  +Y   + R +G+GR L   VA+
Sbjct: 43 VGCVIYLFAFSVYFGRQLNVILVYTDPHYRGKGIGRALMKTVAE 86


>SB_57571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 13 DYEKMSDGPKLSIKDLVHDGFEKQPPEFFCKVAEKHKENILGYAIYFPVYSTWEGR 68
          DYE + +     +K+L  + + K  P F C  A   + N +GY+ YF + +  + R
Sbjct: 4  DYEWLPNVSMPPLKNLTFEDWRKSQPGFACSCA--GESNTIGYS-YFALQNPCKAR 56


>SB_9129| Best HMM Match : efhand (HMM E-Value=0.075)
          Length = 443

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 29  VHDGFEKQPPEFFCKVAEKHKENILGYAIYFPVYSTWEGRALMLEDLYVRMNERRRG 85
           V+  F K P +  C   +   E+I  Y +  PVY T+E   L   ++   + + + G
Sbjct: 382 VYQNFNKDPVQLRC--FQVAVESIREYCVTIPVYDTFEDLVLHTGNVKKMLKDLQEG 436


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.141    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,708,654
Number of Sequences: 59808
Number of extensions: 137684
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 7
length of query: 112
length of database: 16,821,457
effective HSP length: 73
effective length of query: 39
effective length of database: 12,455,473
effective search space: 485763447
effective search space used: 485763447
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)