GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002190-TA|BGIBMGA002190-PA|IPR000182|GCN5-related
N-acetyltransferase
         (112 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81052-3|CAB02871.1|  160|Caenorhabditis elegans Hypothetical pr...    51   2e-07
AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensor...    31   0.19 
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr...    29   0.76 
Z48583-4|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr...    29   0.76 
AC024859-22|ABA00159.2|  183|Caenorhabditis elegans Twik family ...    29   0.76 
AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family ...    29   0.76 
AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical...    29   1.00 
AL032633-1|CAA21594.1|  430|Caenorhabditis elegans Hypothetical ...    26   5.3  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    26   5.3  
Z82285-7|CAB05301.1|  548|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z50874-1|CAA90763.1|  377|Caenorhabditis elegans Hypothetical pr...    25   9.3  

>Z81052-3|CAB02871.1|  160|Caenorhabditis elegans Hypothetical
           protein D2023.4 protein.
          Length = 160

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 3   KFMRLLQELADYEKMSDGPKLSIKDLVHDGFEKQPPEFFCKVAEKHKENILGYAIYFPVY 62
           + + ++ ELA++EKM      + + L  D   K    F   + E+      G  +++  Y
Sbjct: 16  QLISMIHELAEFEKMKSSVVNTAEKLRKDIENKAVHGFIAFIGEEPA----GMNLFYYAY 71

Query: 63  STWEGRALMLEDLYVRMNERRRGVGRLLFDAVAKV 97
           STW G+ L +EDLY+R   RR G+ R L+  +A++
Sbjct: 72  STWVGQYLHMEDLYIRPQFRRMGLARTLWKKLAEL 106


>AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensory
           abnormality protein17 protein.
          Length = 262

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 57  IYFPVYSTWEGRALMLEDLYVRMNERRRGVGRLLFD 92
           +Y     T+EG  L L D YV  + +R+GVG+ + D
Sbjct: 93  LYDSQMQTYEGEILCLLDFYVHFSCQRQGVGQQILD 128


>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 1   MIKFM--RLLQELADYEKMSD--GPKLSIKDLVHDGFEKQPPEFFCKVAEKHKENILGYA 56
           M+K++   L+ E ++ EK  +    KL++K+LV     K P  F   +  K    I G  
Sbjct: 767 MVKYLLAMLVTEASEQEKKLNFHSFKLNLKNLVGTFITKHPDIFKRAMLSK----ITGI- 821

Query: 57  IYFPVYSTWEGRALMLEDLYVRMNERRR 84
           +Y   + +W  RAL  ++  V  +ERR+
Sbjct: 822 VYMEKFVSWWERALKEQEKVVEADERRK 849


>Z48583-4|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 1   MIKFM--RLLQELADYEKMSD--GPKLSIKDLVHDGFEKQPPEFFCKVAEKHKENILGYA 56
           M+K++   L+ E ++ EK  +    KL++K+LV     K P  F   +  K    I G  
Sbjct: 767 MVKYLLAMLVTEASEQEKKLNFHSFKLNLKNLVGTFITKHPDIFKRAMLSK----ITGI- 821

Query: 57  IYFPVYSTWEGRALMLEDLYVRMNERRR 84
           +Y   + +W  RAL  ++  V  +ERR+
Sbjct: 822 VYMEKFVSWWERALKEQEKVVEADERRK 849


>AC024859-22|ABA00159.2|  183|Caenorhabditis elegans Twik family of
           potassium channelsprotein 45, isoform b protein.
          Length = 183

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 51  NILGYAIYFPVYSTWEGRALMLEDLYVRM-NERRRGVGRLLFDAVAKVFGQL 101
           +I+  +IY  +Y ++      LED   R+ N RRRG G  +F  +   F  L
Sbjct: 23  SIVNTSIYSTLYQSFYNLIYSLEDQLDRIHNSRRRGAGYRVFQDMESTFQML 74


>AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family of
           potassium channelsprotein 45, isoform a protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 51  NILGYAIYFPVYSTWEGRALMLEDLYVRM-NERRRGVGRLLFDAVAKVFGQL 101
           +I+  +IY  +Y ++      LED   R+ N RRRG G  +F  +   F  L
Sbjct: 330 SIVNTSIYSTLYQSFYNLIYSLEDQLDRIHNSRRRGAGYRVFQDMESTFQML 381


>AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical
           protein K07H8.3 protein.
          Length = 182

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 44  VAEKHKENILGYAIYFPVYSTWEGRALMLEDLYVRMNERRRGVGRLLFDAVAKVFGQLGN 103
           +AE HK N++GY +        E     +  L V+ + RR G+   + D  A+   +  N
Sbjct: 44  IAEDHKGNVVGYVLAKMEEDPGEEPHGHITSLAVKRSYRRLGLANKMMDQTARAMVETYN 103

Query: 104 TE 105
            +
Sbjct: 104 AK 105


>AL032633-1|CAA21594.1|  430|Caenorhabditis elegans Hypothetical
          protein Y106G6A.1 protein.
          Length = 430

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 2  IKFMRLLQELADYEKMSDGPKLSIKDLVHDGFEKQPPEFFCKVAEKHKEN 51
          +   R+L E+  YE + DG K   + + H+G +K   EF   V +K++E+
Sbjct: 39 LDMFRILYEMGKYEMVIDGQKTLDEAIKHNG-KKLVVEF---VLQKYEED 84


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 4    FMRLLQELADY-EKMSDGPKLSIKDLVHDGFEKQPPE 39
            F+R LQ +  Y EK  DG  ++I++  HD      PE
Sbjct: 4675 FLRDLQSINAYLEKGEDGTDVTIEETSHDNESSSLPE 4711


>Z82285-7|CAB05301.1|  548|Caenorhabditis elegans Hypothetical
          protein T28F3.8 protein.
          Length = 548

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 24 SIKDLVHDGFEKQPPEFFCKVAEKHKENILGYAIYFPV 61
          S K++  +  +K+  + +C + EKH   +  YA  F V
Sbjct: 21 SRKNIKSNSKKKEEYDEYCNIGEKHSTFLFAYAADFDV 58


>Z50874-1|CAA90763.1|  377|Caenorhabditis elegans Hypothetical
           protein R10E4.1 protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 58  YFPVYSTWEGRALMLEDLYVRMNERRRGVGRLLFDAVAKVFGQLG 102
           YF V    E   L +ED  +R+N+R   +    F A+   +G+LG
Sbjct: 142 YFDVLPEEENALLKVEDRLIRVNKRYLSMMSPFFKAL--FYGELG 184


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.141    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,571
Number of Sequences: 27539
Number of extensions: 108756
Number of successful extensions: 238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 11
length of query: 112
length of database: 12,573,161
effective HSP length: 72
effective length of query: 40
effective length of database: 10,590,353
effective search space: 423614120
effective search space used: 423614120
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)