GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002188-TA|BGIBMGA002188-PA|IPR013026|Tetratricopeptide
region, IPR001623|Heat shock protein DnaJ, N-terminal,
IPR001440|Tetratricopeptide TPR_1, IPR013105|Tetratricopeptide TPR_2
         (474 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   3.5  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   3.5  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   3.5  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   3.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.5  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    23   3.5  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   3.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   8.1  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 457 PFHHFQHGSPFQFKFH 472
           P+H   +G P+QF  H
Sbjct: 288 PYHMSPYGHPYQFDLH 303


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 457 PFHHFQHGSPFQFKFH 472
           P+H   +G P+QF  H
Sbjct: 288 PYHMSPYGHPYQFDLH 303


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 457 PFHHFQHGSPFQFKFH 472
           P+H   +G P+QF  H
Sbjct: 288 PYHMSPYGHPYQFDLH 303


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 457 PFHHFQHGSPFQFKFH 472
           P+H   +G P+QF  H
Sbjct: 244 PYHMSPYGHPYQFDLH 259


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 457 PFHHFQHGSPFQFKFH 472
           P+H   +G P+QF  H
Sbjct: 288 PYHMSPYGHPYQFDLH 303


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 457 PFHHFQHGSPFQFKFH 472
           P+H   +G P+QF  H
Sbjct: 76  PYHMSPYGHPYQFDLH 91


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 457 PFHHFQHGSPFQFKFH 472
           P+H   +G P+QF  H
Sbjct: 288 PYHMSPYGHPYQFDLH 303


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 115 VTYADPYNEEAINQYHRIDEYIDDLRLVEAYYRGGDHRA 153
           +TY   YN++    +++  EYI  +     Y + G  RA
Sbjct: 359 LTYPSYYNQDVSCTHYQNPEYISVVNPESPYPQIGSERA 397


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,041
Number of Sequences: 317
Number of extensions: 3578
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 8
length of query: 474
length of database: 114,650
effective HSP length: 59
effective length of query: 415
effective length of database: 95,947
effective search space: 39818005
effective search space used: 39818005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)