GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002188-TA|BGIBMGA002188-PA|IPR013026|Tetratricopeptide
region, IPR001623|Heat shock protein DnaJ, N-terminal,
IPR001440|Tetratricopeptide TPR_1, IPR013105|Tetratricopeptide TPR_2
         (474 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    26   0.79 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           26   0.79 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   3.2  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   9.7  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 350 DEGFQRAKEGLSRAQKLQKQSEQRDYYK--ILGVKRTATKQEIIKAYRKAAQKWHPDSYH 407
           +EG     E +++ + L+   E  D      L    T  K++ ++  R   + ++ +S  
Sbjct: 341 EEGLYPVAEFIAKPEALKLLDENWDLIAPYFLDYNYTIPKEKHVEVAR-LIRNYYFESNK 399

Query: 408 GDEKKLAEKKFIDIAAAKEVLTDPEKRAQ 436
            DE  L  K  ID+A+ +  +TD EK A+
Sbjct: 400 IDETTL--KHLIDVASDRFFITDGEKAAR 426


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 350 DEGFQRAKEGLSRAQKLQKQSEQRDYYK--ILGVKRTATKQEIIKAYRKAAQKWHPDSYH 407
           +EG     E +++ + L+   E  D      L    T  K++ ++  R   + ++ +S  
Sbjct: 341 EEGLYPVAEFIAKPEALKLLDENWDLIAPYFLDYNYTIPKEKHVEVAR-LIRNYYFESNK 399

Query: 408 GDEKKLAEKKFIDIAAAKEVLTDPEKRAQ 436
            DE  L  K  ID+A+ +  +TD EK A+
Sbjct: 400 IDETTL--KHLIDVASDRFFITDGEKAAR 426


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 401 WHPDSYHGDEKKLAEKKFIDIAAAKEVLT 429
           +HP +    E+ L  K+F   AA+KE L+
Sbjct: 392 YHPSTQEDSEEHLTPKRFHSRAASKEDLS 420


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 401 WHPDSYHGDEKKLAEKKFIDIAAAKEVLT 429
           +HP +    E+ L  K+F   AA+KE L+
Sbjct: 392 YHPSTQEDSEEHLTPKRFHSRAASKEDLS 420


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 109 KNDYLEVTYADPYNEEAINQYHRIDEYIDDLRL 141
           KND  E    +PY    +N  ++ID  I+ +R+
Sbjct: 83  KNDESESPKLNPYPNWEMNDINKIDSIINIIRV 115


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 12  VSECATQAEVNKHLELGR 29
           VS+C+T +E N HL+  +
Sbjct: 101 VSDCSTISEENPHLKASK 118


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,653
Number of Sequences: 429
Number of extensions: 4459
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 474
length of database: 140,377
effective HSP length: 60
effective length of query: 414
effective length of database: 114,637
effective search space: 47459718
effective search space used: 47459718
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)