Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002187-TA|BGIBMGA002187-PA|IPR008705|Nanos RNA-binding
(256 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC101210-1|AAI01211.1| 192|Homo sapiens NANOS3 protein protein. 82 2e-15
BC101209-1|AAI01210.1| 192|Homo sapiens NANOS3 protein protein. 82 2e-15
BC117486-1|AAI17487.1| 138|Homo sapiens nanos homolog 2 (Drosop... 76 1e-13
BC117484-1|AAI17485.1| 138|Homo sapiens nanos homolog 2 (Drosop... 76 1e-13
BC042883-1|AAH42883.1| 138|Homo sapiens nanos homolog 2 (Drosop... 76 1e-13
AL157788-3|CAI14719.1| 84|Homo sapiens nanos homolog 1 (Drosop... 76 1e-13
AL157788-2|CAI14718.1| 292|Homo sapiens nanos homolog 1 (Drosop... 76 1e-13
AF458985-1|AAQ04765.1| 292|Homo sapiens EC_Rep1a protein. 76 1e-13
AF275269-1|AAL36982.2| 292|Homo sapiens NANOS1 protein. 76 1e-13
AF010403-1|AAC51734.1| 5262|Homo sapiens ALR protein. 37 0.080
BC047712-1|AAH47712.1| 244|Homo sapiens coiled-coil domain cont... 33 1.3
AY189289-1|AAO86733.1| 137|Homo sapiens LP9167 protein protein. 33 1.3
AK075133-1|BAC11424.1| 244|Homo sapiens protein ( Homo sapiens ... 33 1.3
AK074137-1|BAB84963.1| 161|Homo sapiens FLJ00210 protein protein. 33 1.3
BC085610-1|AAH85610.1| 578|Homo sapiens ZFHX4 protein protein. 32 1.7
BC008965-1|AAH08965.2| 837|Homo sapiens BAZ2A protein protein. 32 1.7
AK131462-1|BAD18607.1| 1103|Homo sapiens protein ( Homo sapiens ... 32 1.7
AK131399-1|BAD18546.1| 907|Homo sapiens protein ( Homo sapiens ... 32 1.7
AB083343-1|BAE96598.1| 3599|Homo sapiens zinc-finger homeodomain... 32 1.7
AB002312-1|BAA20773.2| 1899|Homo sapiens KIAA0314 protein protein. 32 1.7
AL133561-1|CAB63715.1| 580|Homo sapiens hypothetical protein pr... 32 2.3
AF010404-1|AAC51735.1| 4957|Homo sapiens ALR protein. 32 2.3
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 32 2.3
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 32 2.3
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 32 2.3
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 32 2.3
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 31 4.0
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 4.0
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 31 4.0
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 31 4.0
U40215-1|AAC50718.1| 478|Homo sapiens synapsin IIb protein. 31 5.2
L39059-1|AAA62861.1| 869|Homo sapiens transcription factor SL1 ... 30 6.9
BC028131-1|AAH28131.1| 775|Homo sapiens TATA box binding protei... 30 6.9
AY158985-1|AAN38818.1| 869|Homo sapiens TATA box binding protei... 30 6.9
AB209594-1|BAD92831.1| 456|Homo sapiens TBP-associated factor 1... 30 6.9
EF064728-1|ABK41911.1| 426|Homo sapiens Fc receptor-like B prot... 30 9.2
DQ021957-1|AAY42534.1| 426|Homo sapiens Fc receptor related gen... 30 9.2
BC051307-1|AAH51307.1| 582|Homo sapiens synapsin II protein. 30 9.2
BC038564-1|AAH38564.2| 292|Homo sapiens FCRLB protein protein. 30 9.2
BC036197-1|AAH36197.1| 196|Homo sapiens MGC39545 protein protein. 30 9.2
AY786314-1|AAX11390.1| 426|Homo sapiens FREB-2 protein. 30 9.2
AY670683-1|AAT77987.1| 426|Homo sapiens FCRL2a protein. 30 9.2
AL359541-6|CAH74155.2| 426|Homo sapiens Fc receptor-like B prot... 30 9.2
AF077737-1|AAC33789.1| 478|Homo sapiens synapsin IIb protein. 30 9.2
AF077671-1|AAC28368.1| 582|Homo sapiens synapsin IIa protein. 30 9.2
>BC101210-1|AAI01211.1| 192|Homo sapiens NANOS3 protein protein.
Length = 192
Score = 82.2 bits (194), Expect = 2e-15
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 66 SHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDDATR 125
+H LS L+P + +P E + L +P + ++ R +++
Sbjct: 14 AHLVRALSGKEGPETRLSPQP--EPEPMLEPVSALEPMPAPESVPVPGPKDQKRSLESSP 71
Query: 126 TNEE-CRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAKYCP 182
E C FCK+NGE A Y+SH L+D AGRV CP+LR +VC +CGA + AHT ++CP
Sbjct: 72 APERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRERAHTRRFCP 129
>BC101209-1|AAI01210.1| 192|Homo sapiens NANOS3 protein protein.
Length = 192
Score = 82.2 bits (194), Expect = 2e-15
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 66 SHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDDATR 125
+H LS L+P + +P E + L +P + ++ R +++
Sbjct: 14 AHLVRALSGKEGPETRLSPQP--EPEPMLEPVSALEPMPAPESVPVPGPKDQKRSLESSP 71
Query: 126 TNEE-CRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAKYCP 182
E C FCK+NGE A Y+SH L+D AGRV CP+LR +VC +CGA + AHT ++CP
Sbjct: 72 APERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRERAHTRRFCP 129
>BC117486-1|AAI17487.1| 138|Homo sapiens nanos homolog 2
(Drosophila) protein.
Length = 138
Score = 76.2 bits (179), Expect = 1e-13
Identities = 31/53 (58%), Positives = 35/53 (66%)
Query: 130 CRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAKYCP 182
C FCK+NGE Y SH L+ G V CP+LR +VC CGA GD AHT KYCP
Sbjct: 63 CNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCP 115
>BC117484-1|AAI17485.1| 138|Homo sapiens nanos homolog 2
(Drosophila) protein.
Length = 138
Score = 76.2 bits (179), Expect = 1e-13
Identities = 31/53 (58%), Positives = 35/53 (66%)
Query: 130 CRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAKYCP 182
C FCK+NGE Y SH L+ G V CP+LR +VC CGA GD AHT KYCP
Sbjct: 63 CNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCP 115
>BC042883-1|AAH42883.1| 138|Homo sapiens nanos homolog 2
(Drosophila) protein.
Length = 138
Score = 76.2 bits (179), Expect = 1e-13
Identities = 31/53 (58%), Positives = 35/53 (66%)
Query: 130 CRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAKYCP 182
C FCK+NGE Y SH L+ G V CP+LR +VC CGA GD AHT KYCP
Sbjct: 63 CNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCP 115
>AL157788-3|CAI14719.1| 84|Homo sapiens nanos homolog 1
(Drosophila) protein.
Length = 84
Score = 75.8 bits (178), Expect = 1e-13
Identities = 31/53 (58%), Positives = 35/53 (66%)
Query: 130 CRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAKYCP 182
C FC+NN E A Y +H L+ GRV CPVLR + C CGA GD AHT KYCP
Sbjct: 6 CVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCP 58
>AL157788-2|CAI14718.1| 292|Homo sapiens nanos homolog 1
(Drosophila) protein.
Length = 292
Score = 75.8 bits (178), Expect = 1e-13
Identities = 31/53 (58%), Positives = 35/53 (66%)
Query: 130 CRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAKYCP 182
C FC+NN E A Y +H L+ GRV CPVLR + C CGA GD AHT KYCP
Sbjct: 214 CVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCP 266
>AF458985-1|AAQ04765.1| 292|Homo sapiens EC_Rep1a protein.
Length = 292
Score = 75.8 bits (178), Expect = 1e-13
Identities = 31/53 (58%), Positives = 35/53 (66%)
Query: 130 CRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAKYCP 182
C FC+NN E A Y +H L+ GRV CPVLR + C CGA GD AHT KYCP
Sbjct: 214 CVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCP 266
>AF275269-1|AAL36982.2| 292|Homo sapiens NANOS1 protein.
Length = 292
Score = 75.8 bits (178), Expect = 1e-13
Identities = 31/53 (58%), Positives = 35/53 (66%)
Query: 130 CRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAKYCP 182
C FC+NN E A Y +H L+ GRV CPVLR + C CGA GD AHT KYCP
Sbjct: 214 CVFCRNNKEAMALYTTHILKGPDGRVLCPVLRRYTCPLCGASGDNAHTIKYCP 266
>AF010403-1|AAC51734.1| 5262|Homo sapiens ALR protein.
Length = 5262
Score = 36.7 bits (81), Expect = 0.080
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 49 QVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAV 107
Q+ P E P +P P S LS PP + T PP AS++ P E+L S LP+A+
Sbjct: 429 QLEAPLNEEMPLLPPPEE---SPLSPPPEESPTSPPPEASRLSPPPEELPA-SPLPEAL 483
Score = 31.9 bits (69), Expect = 2.3
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLP 104
P PE SP P P + S LS PP + PP S + P E R LS LP
Sbjct: 610 PPPEESPLSPPPEA---SRLSPPPEDSPMSPPPEESPMSPPPEVSR-LSPLP 657
Score = 30.7 bits (66), Expect = 5.2
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 21 SPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNE 80
SP++P E++ S + S T +S P PE SP P P S LS PP
Sbjct: 510 SPFSPLEESPLSPPEESPPSPALET---PLS-PPPEASPLSP-PFEE--SPLSPPPEELP 562
Query: 81 TLTPPAASQVQPTEEQ 96
T PP AS++ P E+
Sbjct: 563 TSPPPEASRLSPPPEE 578
>BC047712-1|AAH47712.1| 244|Homo sapiens coiled-coil domain
containing 95 protein.
Length = 244
Score = 32.7 bits (71), Expect = 1.3
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 12 KEFRLNGLDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSG 71
K F L+ L N DED+ S + +++ + PAP+R PL G+ S
Sbjct: 50 KSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSS 109
Query: 72 LSSPP 76
LS PP
Sbjct: 110 LSLPP 114
>AY189289-1|AAO86733.1| 137|Homo sapiens LP9167 protein protein.
Length = 137
Score = 32.7 bits (71), Expect = 1.3
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 12 KEFRLNGLDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSG 71
K F L+ L N DED+ S + +++ + PAP+R PL G+ S
Sbjct: 50 KSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSS 109
Query: 72 LSSPP 76
LS PP
Sbjct: 110 LSLPP 114
>AK075133-1|BAC11424.1| 244|Homo sapiens protein ( Homo sapiens
cDNA FLJ90652 fis, clone PLACE1004492, weakly similar to
VERPROLIN. ).
Length = 244
Score = 32.7 bits (71), Expect = 1.3
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 12 KEFRLNGLDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSG 71
K F L+ L N DED+ S + +++ + PAP+R PL G+ S
Sbjct: 50 KSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSS 109
Query: 72 LSSPP 76
LS PP
Sbjct: 110 LSLPP 114
>AK074137-1|BAB84963.1| 161|Homo sapiens FLJ00210 protein protein.
Length = 161
Score = 32.7 bits (71), Expect = 1.3
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 12 KEFRLNGLDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSG 71
K F L+ L N DED+ S + +++ + PAP+R PL G+ S
Sbjct: 74 KSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSS 133
Query: 72 LSSPP 76
LS PP
Sbjct: 134 LSLPP 138
>BC085610-1|AAH85610.1| 578|Homo sapiens ZFHX4 protein protein.
Length = 578
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 40 STQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQ-PTEEQLR 98
S+ + S ++P P V LPG + S L P + TLTPP A + PT
Sbjct: 48 SSSLHGISLPTAYPGLPGLPPVLLPGMNGPSSLPGFPQNSNTLTPPGAGMLGFPTSATSS 107
Query: 99 VLSSLPDAVLYTLLR 113
SL A LL+
Sbjct: 108 PALSLSSAPTKPLLQ 122
>BC008965-1|AAH08965.2| 837|Homo sapiens BAZ2A protein protein.
Length = 837
Score = 32.3 bits (70), Expect = 1.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLP 104
P P+ + P P + W + + P PPA S+ QPT ++ SS P
Sbjct: 244 PEPDEAESSPDPQALWFNISAQMPCNAAPTPPPAVSEDQPTPSPQQLASSKP 295
>AK131462-1|BAD18607.1| 1103|Homo sapiens protein ( Homo sapiens
cDNA FLJ16624 fis, clone TESTI4015442, moderately
similar to Mus musculus zinc finger homeodomain 4
(Zfh4-pending). ).
Length = 1103
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 40 STQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQ-PTEEQLR 98
S+ + S ++P P V LPG + S L P + TLTPP A + PT
Sbjct: 573 SSSLHGISLPTAYPGLPGLPPVLLPGMNGPSSLPGFPQNSNTLTPPGAGMLGFPTSATSS 632
Query: 99 VLSSLPDAVLYTLLR 113
SL A LL+
Sbjct: 633 PALSLSSAPTKPLLQ 647
>AK131399-1|BAD18546.1| 907|Homo sapiens protein ( Homo sapiens
cDNA FLJ16492 fis, clone CTONG2028758, highly similar
to Mus musculus zfh-4 mRNA for zinc-finger homeodomain
protein 4. ).
Length = 907
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 40 STQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQ-PTEEQLR 98
S+ + S ++P P V LPG + S L P + TLTPP A + PT
Sbjct: 777 SSSLHGISLPTAYPGLPGLPPVLLPGMNGPSSLPGFPQNSNTLTPPGAGMLGFPTSATSS 836
Query: 99 VLSSLPDAVLYTLLR 113
SL A LL+
Sbjct: 837 PALSLSSAPTKPLLQ 851
>AB083343-1|BAE96598.1| 3599|Homo sapiens zinc-finger homeodomain
protein 4 protein.
Length = 3599
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 40 STQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQ-PTEEQLR 98
S+ + S ++P P V LPG + S L P + TLTPP A + PT
Sbjct: 3069 SSSLHGISLPTAYPGLPGLPPVLLPGMNGPSSLPGFPQNSNTLTPPGAGMLGFPTSATSS 3128
Query: 99 VLSSLPDAVLYTLLR 113
SL A LL+
Sbjct: 3129 PALSLSSAPTKPLLQ 3143
>AB002312-1|BAA20773.2| 1899|Homo sapiens KIAA0314 protein protein.
Length = 1899
Score = 32.3 bits (70), Expect = 1.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLP 104
P P+ + P P + W + + P PPA S+ QPT ++ SS P
Sbjct: 1302 PEPDEAESSPDPQALWFNISAQMPCNAAPTPPPAVSEDQPTPSPQQLASSKP 1353
>AL133561-1|CAB63715.1| 580|Homo sapiens hypothetical protein
protein.
Length = 580
Score = 31.9 bits (69), Expect = 2.3
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 31 WSARAVADTS-TQWNTYSRQVSWP---APERSPKVPLPG-SHWTSGLSSPPVRNETLTPP 85
W+ R+ + S T+ + + WP +P R+P P SH S +PP + T PP
Sbjct: 166 WATRSPSTASLTRTPSRASLTRWPPRASPTRTPPRESPRMSHRASPTRTPPRASPTRRPP 225
Query: 86 AASQVQ-PTEEQLR 98
AS + P E LR
Sbjct: 226 RASPTRTPPRESLR 239
>AF010404-1|AAC51735.1| 4957|Homo sapiens ALR protein.
Length = 4957
Score = 31.9 bits (69), Expect = 2.3
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLP 104
P PE SP P P + S LS PP + PP S + P E R LS LP
Sbjct: 30 PPPEESPLSPPPEA---SRLSPPPEDSPMSPPPEESPMSPPPEVSR-LSPLP 77
Score = 31.9 bits (69), Expect = 2.3
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLP 104
P PE SP P P + S LS PP + T PP S P E L SLP
Sbjct: 93 PPPEESPTSPPPEA---SRLSPPPEDSPTSPPPEDSPASPPPED--SLMSLP 139
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 31.9 bits (69), Expect = 2.3
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 58 SPKVPLPGSHWTSGLSSPPV--RNETLTPPAA-SQVQPTEEQ 96
SP+VPL SG +SPP+ R + TPP+A SQ + T E+
Sbjct: 1414 SPRVPLSAYERVSGRTSPPLLDRARSRTPPSAPSQSRMTSER 1455
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
Length = 2752
Score = 31.9 bits (69), Expect = 2.3
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 58 SPKVPLPGSHWTSGLSSPPV--RNETLTPPAA-SQVQPTEEQ 96
SP+VPL SG +SPP+ R + TPP+A SQ + T E+
Sbjct: 2382 SPRVPLSAYERVSGRTSPPLLDRARSRTPPSAPSQSRMTSER 2423
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 47 SRQVSWPAPERSPKVPLPGSHWTSG-----LSSPPVRNETLTPPAASQVQPTEEQLRVLS 101
SR S P P++ K P SH +S S P R ++T P A++ T ++
Sbjct: 815 SRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFE 874
Query: 102 SLPDAVL 108
S PD L
Sbjct: 875 SSPDPEL 881
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
protein.
Length = 1275
Score = 31.9 bits (69), Expect = 2.3
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 58 SPKVPLPGSHWTSGLSSPPV--RNETLTPPAA-SQVQPTEEQ 96
SP+VPL SG +SPP+ R + TPP+A SQ + T E+
Sbjct: 905 SPRVPLSAYERVSGRTSPPLLDRARSRTPPSAPSQSRMTSER 946
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 31.9 bits (69), Expect = 2.3
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 58 SPKVPLPGSHWTSGLSSPPV--RNETLTPPAA-SQVQPTEEQ 96
SP+VPL SG +SPP+ R + TPP+A SQ + T E+
Sbjct: 2430 SPRVPLSAYERVSGRTSPPLLDRARSRTPPSAPSQSRMTSER 2471
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 47 SRQVSWPAPERSPKVPLPGSHWTSG-----LSSPPVRNETLTPPAASQVQPTEEQLRVLS 101
SR S P P++ K P SH +S S P R ++T P A++ T ++
Sbjct: 863 SRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFE 922
Query: 102 SLPDAVL 108
S PD L
Sbjct: 923 SSPDPEL 929
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 47 SRQVSWPAPERSPKVPLPGSHWTSG-----LSSPPVRNETLTPPAASQVQPTEEQLRVLS 101
SR S P P++ K P SH +S S P R ++T P A++ T ++
Sbjct: 815 SRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFE 874
Query: 102 SLPDAVL 108
S PD L
Sbjct: 875 SSPDPEL 881
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 47 SRQVSWPAPERSPKVPLPGSHWTSG-----LSSPPVRNETLTPPAASQVQPTEEQLRVLS 101
SR S P P++ K P SH +S S P R ++T P A++ T ++
Sbjct: 815 SRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFE 874
Query: 102 SLPDAVL 108
S PD L
Sbjct: 875 SSPDPEL 881
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 47 SRQVSWPAPERSPKVPLPGSHWTSG-----LSSPPVRNETLTPPAASQVQPTEEQLRVLS 101
SR S P P++ K P SH +S S P R ++T P A++ T ++
Sbjct: 780 SRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFE 839
Query: 102 SLPDAVL 108
S PD L
Sbjct: 840 SSPDPEL 846
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 47 SRQVSWPAPERSPKVPLPGSHWTSG-----LSSPPVRNETLTPPAASQVQPTEEQLRVLS 101
SR S P P++ K P SH +S S P R ++T P A++ T ++
Sbjct: 605 SRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFE 664
Query: 102 SLPDAVL 108
S PD L
Sbjct: 665 SSPDPEL 671
>U40215-1|AAC50718.1| 478|Homo sapiens synapsin IIb protein.
Length = 478
Score = 30.7 bits (66), Expect = 5.2
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 44 NTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRN---ETLTPPA---ASQVQPTEE-Q 96
N Y + P P++ P P PG S ++PP + E PPA A+Q PT
Sbjct: 20 NGYMTDLQRPEPQQPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAAQPAPTPSVG 79
Query: 97 LRVLSSLPDAVLYT 110
SSL AV T
Sbjct: 80 SSFFSSLSQAVKQT 93
>L39059-1|AAA62861.1| 869|Homo sapiens transcription factor SL1
protein.
Length = 869
Score = 30.3 bits (65), Expect = 6.9
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 56 ERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQP 92
ER P VP+ W GL SP + L PP S VQP
Sbjct: 470 ERLPLVPM--LKWNHGLPSPLLLARLLPPPRPSCVQP 504
>BC028131-1|AAH28131.1| 775|Homo sapiens TATA box binding protein
(TBP)-associated factor, RNA polymerase I, C, 110kDa
protein.
Length = 775
Score = 30.3 bits (65), Expect = 6.9
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 56 ERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQP 92
ER P VP+ W GL SP + L PP S VQP
Sbjct: 377 ERLPLVPM--LKWNHGLPSPLLLARLLPPPRPSCVQP 411
>AY158985-1|AAN38818.1| 869|Homo sapiens TATA box binding protein
(TBP)-associated factor, RNA polymerase I, C, 110kDa
protein.
Length = 869
Score = 30.3 bits (65), Expect = 6.9
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 56 ERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQP 92
ER P VP+ W GL SP + L PP S VQP
Sbjct: 470 ERLPLVPM--LKWNHGLPSPLLLARLLPPPRPSCVQP 504
>AB209594-1|BAD92831.1| 456|Homo sapiens TBP-associated factor 1C
isoform 1 variant protein.
Length = 456
Score = 30.3 bits (65), Expect = 6.9
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 56 ERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQP 92
ER P VP+ W GL SP + L PP S VQP
Sbjct: 57 ERLPLVPM--LKWNHGLPSPLLLARLLPPPRPSCVQP 91
>EF064728-1|ABK41911.1| 426|Homo sapiens Fc receptor-like B
protein.
Length = 426
Score = 29.9 bits (64), Expect = 9.2
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 47 SRQVSWPAPERSPKVPLPGS--HWTS-GLSSPPVRNETLTPPAASQVQPTEEQLRVLSSL 103
+R +S+ P S VPL S + TS GL P T PPA + P E+ L
Sbjct: 311 NRPLSFRKPPVSRSVPLVTSVRNTTSTGLQFPASGAPTAGPPACAPPTPLEQSAGALK-- 368
Query: 104 PDAVLYTLLRKLERIRG 120
PD L LLR+++ ++G
Sbjct: 369 PDVDL--LLREMQLLKG 383
>DQ021957-1|AAY42534.1| 426|Homo sapiens Fc receptor related gene
protein.
Length = 426
Score = 29.9 bits (64), Expect = 9.2
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 47 SRQVSWPAPERSPKVPLPGS--HWTS-GLSSPPVRNETLTPPAASQVQPTEEQLRVLSSL 103
+R +S+ P S VPL S + TS GL P T PPA + P E+ L
Sbjct: 311 NRPLSFRKPPVSRSVPLVTSVRNTTSTGLQFPASGAPTAGPPACAPPTPLEQSAGALK-- 368
Query: 104 PDAVLYTLLRKLERIRG 120
PD L LLR+++ ++G
Sbjct: 369 PDVDL--LLREMQLLKG 383
>BC051307-1|AAH51307.1| 582|Homo sapiens synapsin II protein.
Length = 582
Score = 29.9 bits (64), Expect = 9.2
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 44 NTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRN---ETLTPPA---ASQVQPTEE-Q 96
N Y + P P++ P P PG S ++PP + E PPA A Q PT
Sbjct: 20 NGYMTDLQRPEPQQPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQPAPTPSVG 79
Query: 97 LRVLSSLPDAVLYT 110
SSL AV T
Sbjct: 80 SSFFSSLSQAVKQT 93
>BC038564-1|AAH38564.2| 292|Homo sapiens FCRLB protein protein.
Length = 292
Score = 29.9 bits (64), Expect = 9.2
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 47 SRQVSWPAPERSPKVPLPGS--HWTS-GLSSPPVRNETLTPPAASQVQPTEEQLRVLSSL 103
+R +S+ P S VPL S + TS GL P T PPA + P E+ L
Sbjct: 177 NRPLSFRKPPVSRSVPLVTSVRNTTSTGLQFPASGAPTAGPPACAPPTPLEQSAGALK-- 234
Query: 104 PDAVLYTLLRKLERIRG 120
PD L LLR+++ ++G
Sbjct: 235 PDVDL--LLREMQLLKG 249
>BC036197-1|AAH36197.1| 196|Homo sapiens MGC39545 protein protein.
Length = 196
Score = 29.9 bits (64), Expect = 9.2
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 58 SPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLER 117
+P++P PG+H T+ + +L PP S+ S A + L +
Sbjct: 28 APRIPEPGAHPTAARPATAQPPRSLLPPVCSKTIAPPASAAAASGSDTAGMRGLGKAPHS 87
Query: 118 IRGDDATRTNEECRFCKN 135
G + R N + + C N
Sbjct: 88 GEGHERGRGNSKMKACNN 105
>AY786314-1|AAX11390.1| 426|Homo sapiens FREB-2 protein.
Length = 426
Score = 29.9 bits (64), Expect = 9.2
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 47 SRQVSWPAPERSPKVPLPGS--HWTS-GLSSPPVRNETLTPPAASQVQPTEEQLRVLSSL 103
+R +S+ P S VPL S + TS GL P T PPA + P E+ L
Sbjct: 311 NRPLSFRKPPVSRSVPLVTSVRNTTSTGLQFPASGAPTAGPPACAPPTPLEQSAGALK-- 368
Query: 104 PDAVLYTLLRKLERIRG 120
PD L LLR+++ ++G
Sbjct: 369 PDVDL--LLREMQLLKG 383
>AY670683-1|AAT77987.1| 426|Homo sapiens FCRL2a protein.
Length = 426
Score = 29.9 bits (64), Expect = 9.2
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 47 SRQVSWPAPERSPKVPLPGS--HWTS-GLSSPPVRNETLTPPAASQVQPTEEQLRVLSSL 103
+R +S+ P S VPL S + TS GL P T PPA + P E+ L
Sbjct: 311 NRPLSFRKPPVSRSVPLVTSVRNTTSTGLQFPASGAPTAGPPACAPPTPLEQSAGALK-- 368
Query: 104 PDAVLYTLLRKLERIRG 120
PD L LLR+++ ++G
Sbjct: 369 PDVDL--LLREMQLLKG 383
>AL359541-6|CAH74155.2| 426|Homo sapiens Fc receptor-like B
protein.
Length = 426
Score = 29.9 bits (64), Expect = 9.2
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 47 SRQVSWPAPERSPKVPLPGS--HWTS-GLSSPPVRNETLTPPAASQVQPTEEQLRVLSSL 103
+R +S+ P S VPL S + TS GL P T PPA + P E+ L
Sbjct: 311 NRPLSFRKPPVSRSVPLVTSVRNTTSTGLQFPASGAPTAGPPACAPPTPLEQSAGALK-- 368
Query: 104 PDAVLYTLLRKLERIRG 120
PD L LLR+++ ++G
Sbjct: 369 PDVDL--LLREMQLLKG 383
>AF077737-1|AAC33789.1| 478|Homo sapiens synapsin IIb protein.
Length = 478
Score = 29.9 bits (64), Expect = 9.2
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 44 NTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRN---ETLTPPA---ASQVQPTEE-Q 96
N Y + P P++ P P PG S ++PP + E PPA A Q PT
Sbjct: 20 NGYMTDLQRPEPQQPPPPPPPGPGAASASAAPPTASPGPERKPPPASAPAPQPAPTPSVG 79
Query: 97 LRVLSSLPDAVLYT 110
SSL AV T
Sbjct: 80 SSFFSSLSQAVKQT 93
>AF077671-1|AAC28368.1| 582|Homo sapiens synapsin IIa protein.
Length = 582
Score = 29.9 bits (64), Expect = 9.2
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 44 NTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRN---ETLTPPA---ASQVQPTEE-Q 96
N Y + P P++ P P PG S ++PP + E PPA A Q PT
Sbjct: 20 NGYMTDLQRPEPQQPPPPPPPGPGAASASAAPPTASPGPERKPPPASAPAPQPAPTPSVG 79
Query: 97 LRVLSSLPDAVLYT 110
SSL AV T
Sbjct: 80 SSFFSSLSQAVKQT 93
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.317 0.132 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,229,391
Number of Sequences: 224733
Number of extensions: 1673504
Number of successful extensions: 5298
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 5229
Number of HSP's gapped (non-prelim): 90
length of query: 256
length of database: 73,234,838
effective HSP length: 88
effective length of query: 168
effective length of database: 53,458,334
effective search space: 8981000112
effective search space used: 8981000112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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