GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002187-TA|BGIBMGA002187-PA|IPR008705|Nanos RNA-binding
         (256 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.75 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.2  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 53  PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLP 104
           PAP  SP V  PGS  TS  S   + +  + P     V      LR L   P
Sbjct: 92  PAPLASPLVQEPGSSTTSATSGAVMASPPM-PITTDNVAAISGVLRSLLDRP 142


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
          protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAA 87
          PAP+ S   P+  S  TS  ++PP    +   PA+
Sbjct: 13 PAPQ-SAATPISSSGMTSPAAAPPPATTSSGSPAS 46



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 53  PAPERSPKVPLPGSHWTSGLSSP 75
           P P  S   P PGS  + G+S P
Sbjct: 205 PEPVPSTPYPPPGSLGSMGVSVP 227


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 9   DAMKEFRLNGLD 20
           D ++EF+ NGLD
Sbjct: 625 DFLREFQFNGLD 636


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 75  PPVRNETLTPPAASQVQPTE 94
           P   N  +TPPA+ Q + ++
Sbjct: 456 PNTNNAIMTPPASVQTESSD 475


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 75  PPVRNETLTPPAASQVQPTE 94
           P   N  +TPPA+ Q + ++
Sbjct: 404 PNTNNAIMTPPASVQTESSD 423


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,446
Number of Sequences: 317
Number of extensions: 2406
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 256
length of database: 114,650
effective HSP length: 55
effective length of query: 201
effective length of database: 97,215
effective search space: 19540215
effective search space used: 19540215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)