GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002187-TA|BGIBMGA002187-PA|IPR008705|Nanos RNA-binding
         (256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.50 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    29   0.87 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.0  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   2.0  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    27   2.7  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    27   3.5  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    26   4.7  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   4.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   4.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.2  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   8.2  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   8.2  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.2  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   8.2  

>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 7   LDDAMKEFRLNGLDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGS 66
           ++D  K   ++  +    P ++++  ++   +T T  +  +        E SP   LP  
Sbjct: 381 INDVKKNIEVSANEPQPRPVKEDVPKSQVGGETDTT-DVINNSTPKEETEESPSTELP-- 437

Query: 67  HWTSGLSSPPVRNETLTPPAASQVQPTE 94
              +G   PP + E   P  AS  +P+E
Sbjct: 438 --ETGKEQPPNKAEPAVPTEASSTKPSE 463


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
          Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 20 DSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERS-PKVPLPGSHWTSGLSSPPVR 78
          + P+N + +  W+A+ + D S +WN++    S P+  R+ P   +    WT+G+    V 
Sbjct: 29 NEPWNLNRN--WTAQKILDYSAEWNSHEYFPS-PSNWRALPFYTIILDKWTNGVPENDVA 85

Query: 79 NETL 82
           +T+
Sbjct: 86 EDTV 89


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 71   GLSSP-PVRNETLTP---PAASQVQPTEEQLRVLSSLP 104
            G  SP PV + T TP   P A Q+QP ++   V S++P
Sbjct: 1256 GTPSPAPVNSATSTPVAAPTAQQIQPGKQASAVSSNVP 1293


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 61  VPLPGSHWT-SGLSSPPVRNETLTPPAASQVQP 92
           +P PGS  T S LSSP ++ ++ +PP +    P
Sbjct: 394 IPSPGSSTTCSNLSSPHIKRKSRSPPQSLPSTP 426


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 74  SPPVRNETLTPPAASQVQPTEEQLRVLSSLP 104
           SP   NE ++PP+A    P+ E+L+  +SLP
Sbjct: 264 SPATVNEHISPPSA-LTNPSTEELKPSTSLP 293


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/35 (28%), Positives = 24/35 (68%)

Query: 26  DEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPK 60
           DE++++S+    ++S+Q+++ S + S P+   +PK
Sbjct: 329 DEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPK 363


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 79  NETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKL 115
           NE     A S  QPTE+   +L S  +AV+ +  RK+
Sbjct: 137 NEKYLQSALSYTQPTEDSSSLLDSDANAVMMSWERKI 173


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 45  TYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPT-----EEQLR- 98
           +Y     +P    +P      + W +   +    N   +PP  SQ+ PT     E+QLR 
Sbjct: 255 SYGANSQYPIIAATPLNSQTQASWVAQPENQAYANLIPSPPTTSQILPTELTEEEKQLRS 314

Query: 99  -VLSSLPDAVLYTLLRKLERI 118
            VL  L       L + LER+
Sbjct: 315 KVLFYLKQDSFIQLCQSLERV 335



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 62  PLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLP 104
           PL      +G++  P+R++T      +  QPT ++  V++S P
Sbjct: 204 PLKRFRGDAGMTQMPLRSDTSIESITASQQPTWDENVVITSSP 246


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)

Query: 72  LSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVL 108
           +++PPV N  LTPPA     P  E   V ++ P+A++
Sbjct: 230 VTTPPVNNTLLTPPA-----PPVELPPVTTTSPNAII 261


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 54  APERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQL-RVLSSLP 104
           AP  +P  P P S      S+PP    ++ PP+ +   P   +   + SSLP
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPP--RPSIPPPSPASAPPIPSKAPPIPSSLP 172


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 46  YSRQVSWPAPERSPKVPLPGSHWTSGL----SSPPVRNETLTPPAASQVQPTEEQLRVL 100
           Y   V+    E SPK  +  ++W S L    SSP V   T T  +++ + P  E   +L
Sbjct: 171 YGHNVALTCFENSPKELIDYNYWLSWLSFSKSSPVVLWLTFTRISSAGLSPNAETFEIL 229


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 20  DSPYNPDEDNIWSARAV--ADTSTQWNTYSR-QVSWPAPERSPKVPLPGSHWTSGLSSPP 76
           D P   D +++  +  V   +TS Q  +++  QV+  A E SP +   G+H  +G S P 
Sbjct: 150 DFPEEDDIESVLPSTIVHRCNTSQQEVSHTHTQVADSATESSPLLSYTGNHNGAGTSKPV 209

Query: 77  VRNETLTPPAASQVQ 91
             + ++   A  Q +
Sbjct: 210 NNHGSIEQDAPKQTK 224


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 43  WNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAAS 88
           W TY+ Q +  +P+ +P +P P     +   + P   + L P + S
Sbjct: 205 WLTYNAQFAQNSPQLAPSIPSPMKLSPANQQAMPPYPQMLGPGSIS 250


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 108 LYTLLRKLERIRGDDA---TRTNEECRFCKNNGERAAYYRSHALRDAAG 153
           L T + K E   GD+A    + NEECR+   +  +A    +H LR   G
Sbjct: 90  LVTSIWKGEAHYGDEAFELLKANEECRYVFGDHMKALGEATHPLRRTHG 138


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,148,309
Number of Sequences: 5004
Number of extensions: 44231
Number of successful extensions: 152
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 19
length of query: 256
length of database: 2,362,478
effective HSP length: 71
effective length of query: 185
effective length of database: 2,007,194
effective search space: 371330890
effective search space used: 371330890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)