Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002187-TA|BGIBMGA002187-PA|IPR008705|Nanos RNA-binding
(256 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1012 + 23550314-23551504 33 0.23
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.40
08_01_0027 - 195321-195932,197206-197415 32 0.52
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 32 0.52
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 32 0.52
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 31 1.2
09_02_0603 - 11150739-11150746,11150791-11151340 31 1.2
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 30 2.1
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 2.8
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 29 2.8
07_01_0675 + 5055842-5055950,5056036-5056193,5056276-5057067,505... 29 3.7
01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386 29 4.9
10_08_0535 + 18613223-18613717,18615858-18616373 28 6.5
07_03_1107 - 24024387-24024497,24025799-24026410 28 6.5
07_01_0942 + 7957776-7958004,7958113-7958708 28 6.5
01_05_0224 + 19485296-19485493,19485584-19487817,19487903-194881... 28 6.5
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 28 6.5
11_06_0610 - 25449085-25453284 28 8.5
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 28 8.5
10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728 28 8.5
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 28 8.5
04_04_0373 - 24785799-24786200,24787979-24788161,24790909-247911... 28 8.5
>08_02_1012 + 23550314-23551504
Length = 396
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQ 96
P P P VP S +S+PP R + PP A++ QPT E+
Sbjct: 170 PRPASPPPVPA-APEVASAVSTPPARPKRGRPPRAAKPQPTPER 212
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 32.3 bits (70), Expect = 0.40
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLP 104
P+P +P+ P SG S+P T P+ P+ +Q RV S P
Sbjct: 28 PSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSPAPSPQQQRVASPPP 79
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 31.9 bits (69), Expect = 0.52
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 43 WNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSS 102
WN + Q P +RSP P+ +H PP+R+E++ +S E + V +
Sbjct: 37 WNWFPSQSQSPTTQRSPICPIKSNH-------PPIRSESVQAAESSTSIWPNESIAVQNI 89
Query: 103 LPDAVLYTLLRKL-ERIRGDDATRTNE 128
+ L L R L E I D T +
Sbjct: 90 ASKSSLGCLSRMLTESIHADVTINTTD 116
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 31.9 bits (69), Expect = 0.52
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 28 DNIWSARAVADTSTQWNTYSRQVSWPA--PERSPKVPLPGSHWTSGLSSPP-VRNETLTP 84
D ++S A A T+ +S S A P +P + LP TSG S P + + P
Sbjct: 640 DGMYSQAAAASTAANAQAFSGSASSVAMRPPGAPMLALPAPPGTSGASGDPFAASMAVAP 699
Query: 85 PAASQVQPTE 94
PA Q+ E
Sbjct: 700 PAYVQMSDME 709
>04_04_0585 -
26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 31.9 bits (69), Expect = 0.52
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 15 RLNGLDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAP-ERSPKVPLPGSHWTSG-- 71
R +G Y+ D + D W VS P+P R+P+ GSH SG
Sbjct: 158 RYSGSKRSYDFDRERRGGGGGGVDDDCDWERQGAAVSRPSPRRRTPERKRSGSHERSGGS 217
Query: 72 ----LSSPPVRNETLTPPAASQVQPTEEQLRVLSSLP 104
+S P R P AS + + +Q + S+P
Sbjct: 218 GSRRVSRSPGRRADSVPATASGERASRQQPGKMVSVP 254
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 30.7 bits (66), Expect = 1.2
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 9 DAMKEFRLNGLDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHW 68
++ ++ ++ + PY N + V T++ +T S P P S +P
Sbjct: 686 NSRQDHPMSSANGPYT--SGNSAAIPKVNSTTSLQSTPSTSFPSPVPTTSNNNMMPAPQN 743
Query: 69 TSGLSSPPVRNE--TLTPPAA--SQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDDAT 124
T+ LSSP + + PPA + P E Q V L D ++ + + ++ G+D
Sbjct: 744 TNQLSSPTASSNLPPMQPPATRPQEPDPNESQSSVQRILQDLMMSPQMNGVGQL-GNDMK 802
Query: 125 RTN 127
R N
Sbjct: 803 RPN 805
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRV 99
P P S VPLP SG+ PP PP S+V P QL V
Sbjct: 46 PPPPGSTFVPLP----QSGVPPPPPLGSFFVPPPQSRVPPPPPQLGV 88
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 32 SARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQ 91
+A A +ST ++ +R+ S PAP P+ P P H S + ++ PP+ SQ Q
Sbjct: 344 AAIPAAGSSTPSSSQARKASAPAPPSPPEPPSP-RHPASPPLLRSLPHQPTPPPSPSQ-Q 401
Query: 92 PT 93
PT
Sbjct: 402 PT 403
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 55 PERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRK 114
P K P S+ +S ++P N + +PP + + VLS L A+ YT +K
Sbjct: 161 PANPNKARHPSSNKSSSPAAPRRTNSSSSPPNLAIAVGAVLAILVLSLLGAAIWYTTKKK 220
Query: 115 LERIRGDDATR 125
++ R D+ R
Sbjct: 221 KKQRRRDNGYR 231
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/62 (30%), Positives = 24/62 (38%)
Query: 30 IWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQ 89
IW R+ + T + SR+ P PK L S TS P R + L P S
Sbjct: 625 IWGVRSTENLFTTPSMDSRRAFALFPSECPKSSLTSSTRTSSHLHSPTRTDVLLSPFGSY 684
Query: 90 VQ 91
Q
Sbjct: 685 TQ 686
>07_01_0675 +
5055842-5055950,5056036-5056193,5056276-5057067,
5057544-5057760,5058280-5058449,5058986-5059630
Length = 696
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 133 CKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAKYCPR 183
C N+ + AA R A + +G ++++ +CARC T PR
Sbjct: 56 CCNSTDDAAVQRQFAAMNISGTPCGELVKSILCARCNPYAGELFTVTTSPR 106
>01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386
Length = 871
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 217 EYVTFGERPPSAARDTRLYGAFDSAPLDPLWAALEQKLM 255
++ TFG+ P ++ ++ +++ A+D P + AL QK++
Sbjct: 643 DFYTFGDHPETSFQNGQIWAAYDEEDGMPRYYALIQKVL 681
>10_08_0535 + 18613223-18613717,18615858-18616373
Length = 336
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 55 PERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPT-EEQLRVLSSLPDAVLYTLLR 113
PER +PL G + P + + L PPA Q PT + R +S + R
Sbjct: 39 PERRGFIPLADRIRDLGAAFPRINLDGLVPPAPPQTHPTVAREERASASAVAGLTVEEAR 98
Query: 114 KLERIRGDDATR 125
K+ R +A R
Sbjct: 99 KVLRATQMEAAR 110
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 55 PERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDA 106
P +S K P P + + PP + + P AS P E + + PDA
Sbjct: 88 PTKSTKAPAPAPK-AAKATPPPASSPPVEAPVASPPSPAAEAPATIPTKPDA 138
>07_01_0942 + 7957776-7958004,7958113-7958708
Length = 274
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 62 PLPGSHWTSGL-SSPPVRNETLTPPAASQVQPTEEQLRVLSSL 103
P GS WTS + PPVR+ PP + + P + +S L
Sbjct: 51 PTGGSWWTSASWTCPPVRSSGRCPPGVTFIYPFLVPILCMSGL 93
>01_05_0224 +
19485296-19485493,19485584-19487817,19487903-19488154,
19488235-19488345,19488435-19488516,19488791-19488982
Length = 1022
Score = 28.3 bits (60), Expect = 6.5
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 28 DNIWSARAVA-DTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTS--GLSSPPVRNETLTP 84
D I SA +A +ST ++ + + PAP PK P P H S L SPP + P
Sbjct: 542 DIILSAAVLAAGSSTPSSSQAMTAAAPAPPSPPKPPSP-RHPPSPPPLRSPP--RQPTPP 598
Query: 85 PAASQVQP 92
P+ SQ P
Sbjct: 599 PSPSQQPP 606
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 70 SGLSSPPVRNETLTPPAASQ 89
S SSPP N+T TPP A+Q
Sbjct: 2 SSPSSPPPANQTATPPPANQ 21
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 53 PAPER---SPKVPLPGSHWTSG-LSSPPVRNETLTPPAASQVQPTEEQ 96
P PE SP P P H S SSPP PP + PT E+
Sbjct: 718 PTPESEASSPPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEE 765
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 53 PAPERSPKVPLPGSH---WTSGLSSPPVRNETLTPPAASQVQP 92
PAP + P+ P P SH TS +PP AASQ P
Sbjct: 423 PAPSQQPQPPPPPSHPTPITSVAPAPPPPPPAAAAAAASQPSP 465
>10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728
Length = 502
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
Query: 18 GLDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVP-LPGSHWTSGLSSPP 76
G D PYN +N A V S + +Q+ AP P +P P ++ P
Sbjct: 289 GFDRPYNWAHENAPGATPVRQESEHGSQDKQQMMPNAPFMFPPMPHQPNFMMPMNMNQPL 348
Query: 77 VRNETLTPPAASQVQPTEEQLRVLSSLPDAVL 108
+ N + P P LPD L
Sbjct: 349 MSNTSFNYPLQQDGNPQFFSAPFQMQLPDVGL 380
>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 9 DAMKEFRLNGLDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERS 58
D K + N P+ D WS S+ WN Q SW AP+ S
Sbjct: 1428 DGCKNWNRNDDRRPFGQDRGGDWSQ------SSDWNANKGQSSWGAPKPS 1471
>04_04_0373 -
24785799-24786200,24787979-24788161,24790909-24791170,
24791565-24791656
Length = 312
Score = 27.9 bits (59), Expect = 8.5
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 85 PAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDDATRTNEECRF---CKNNGERAA 141
PA S++ QL +L+ + D L LL+ ER+ +A RF K+ R
Sbjct: 163 PATSRILNISSQLGLLNKVSDPELKRLLQDEERL--TEAEVEGMASRFLAQVKDGTWRGQ 220
Query: 142 YYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAKYCPRATRDE 188
+ + ++A + R ARGD +CP TR +
Sbjct: 221 GWPKVWTDYSVSKLALNAYARVLARRLQARGDRVSVNCFCPGFTRTD 267
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,170,180
Number of Sequences: 37544
Number of extensions: 347281
Number of successful extensions: 1117
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1096
Number of HSP's gapped (non-prelim): 41
length of query: 256
length of database: 14,793,348
effective HSP length: 80
effective length of query: 176
effective length of database: 11,789,828
effective search space: 2075009728
effective search space used: 2075009728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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