Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002187-TA|BGIBMGA002187-PA|IPR008705|Nanos RNA-binding
(256 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46970| Best HMM Match : zf-nanos (HMM E-Value=2.6e-35) 78 6e-15
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_377| Best HMM Match : IQ (HMM E-Value=0.0002) 31 1.2
SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17) 30 1.6
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7) 29 3.7
SB_27220| Best HMM Match : Seryl_tRNA_N (HMM E-Value=3.2) 28 6.5
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_38715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_25171| Best HMM Match : Drf_FH1 (HMM E-Value=0.032) 28 8.6
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13) 28 8.6
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_46970| Best HMM Match : zf-nanos (HMM E-Value=2.6e-35)
Length = 216
Score = 78.2 bits (184), Expect = 6e-15
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 119 RGDDATRTNEECRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTA 178
R + R C FC+NNGE Y SH L+DA G CP+LRA+ C C A G +HT
Sbjct: 141 RENKKNRNANVCVFCRNNGESKKVYSSHVLKDAEGNTTCPILRAYTCPLCKASGSQSHTI 200
Query: 179 KYCPRATRDERIK 191
KYCP+ +++
Sbjct: 201 KYCPKNKNGSKLQ 213
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 31.5 bits (68), Expect = 0.70
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%)
Query: 3 GKCSLDDAMKEFRLNGLDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVP 62
GK S + + R G+ D + R++ + S + + + P + S KVP
Sbjct: 853 GKPSTPPSRSKKRTRGISGDSVSDNRHT-PRRSLRNLSEECSESRSDEAPPRTDASDKVP 911
Query: 63 LPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDD 122
P + W + S V LT + Q +E+ L S P + L R R RG +
Sbjct: 912 SPRTKWREQVESCDVPQAPLTRRRTNSKQDADEKAVPLGSSPQRI--GLDRPKTRGRGSE 969
Query: 123 ATRTN 127
T+
Sbjct: 970 GEATS 974
>SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)
Length = 1376
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 70 SGLSSPPVRNETLTPPAASQVQPTE-EQLRVLSSLPDAVLYTLLRKLERIRGDDATRTNE 128
+G S P ++ TP S PT+ ++ ++L A +RKL+ D+++ +
Sbjct: 974 TGHQSDPDSGQSETPAPESPTSPTKPKKKKILLRSTSADQVPRMRKLQSTMSMDSSQLSS 1033
Query: 129 ECRFCKNNGERAAYYRSHALRDAAGRVA 156
F G RAA S + A A
Sbjct: 1034 SLNFSSRLGHRAAMMLSELRSEIASLTA 1061
>SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)
Length = 505
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 44 NTYSRQVSWPAPERS-----PKVPLPGSHWTSGLSSP-PVRNETLTPPAASQVQPTEEQL 97
N SR S PAP R K P PGS + SP P R+ T TPP S V+ T+ QL
Sbjct: 292 NHASRSQS-PAPPRGRSLKRSKSPAPGSAAAARSRSPSPARSSTSTPPTISSVK-TKLQL 349
>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
Length = 1815
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 56 ERSPKVPLPGSHWTSGLSSPPVRNETLTPPAAS 88
E + K+P P S S SPP ++ TL+P ++S
Sbjct: 1659 EDNVKIPPPASEHGSVAGSPPTQSPTLSPSSSS 1691
>SB_27220| Best HMM Match : Seryl_tRNA_N (HMM E-Value=3.2)
Length = 517
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 74 SPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDDATRTN 127
+PP++ + AAS + + Q + L D++L +L+ ++R DDA R N
Sbjct: 76 NPPLQTGNIRSEAASALPSSILQADFVELLKDSLLTSLVDTVKRSLIDDANRQN 129
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 55 PERSPKVPLPGSHWT--SGLSSPPVRNETLTPPAASQVQPTE 94
P+RSP P S S + +P +++ + PPA+ PTE
Sbjct: 433 PQRSPSASKPSSRPPPLSSVQNPSKQDKKVIPPASLNAAPTE 474
>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 47 SRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDA 106
SR S A +P P S + ++SP V TL+PP + QP+ L + P A
Sbjct: 884 SRYASTQAATSAPYASPPPSPYQQ-ITSPQVMQSTLSPPDSQYNQPSVSTQGSLDNQPRA 942
>SB_38715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 34 RAVADTSTQWNTYSRQ--VSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQ 91
RA A +TQ +T S Q ++W E V +H+ + P+ NET S +
Sbjct: 94 RASAGIATQ-HTKSTQDLITWRGNENDSMVSTYRTHFEKNPAITPIINETEPVHIRSNLN 152
Query: 92 PTEEQLRVLSSLP 104
QLR S+ P
Sbjct: 153 LRRRQLRAASAPP 165
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 32 SARAVADTSTQWNTYSRQVSWPAPERSPKVPLPG-SHWTSGLSSPPVRNETLTPP 85
S ++A TS + Q++ P P R+ +P P H TS SS T TPP
Sbjct: 970 STASLAHTSPAHLATASQITHPLPHRTISIPYPSPPHTTSSQSS----QATHTPP 1020
>SB_25171| Best HMM Match : Drf_FH1 (HMM E-Value=0.032)
Length = 244
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 16 LNGLDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSP 75
L G PY P N++ ++ + Q+ P P VPLP S G +P
Sbjct: 50 LGGNLYPYPPLGGNLYPHPLYGGNLYPYHPFGGQLVPPPPSWRQLVPLPPSWRQLGTPTP 109
Query: 76 PVRNETLT-PPAASQVQP 92
P+ PP + P
Sbjct: 110 PLGGNLYPYPPLGGNLYP 127
>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 74 SPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDDATRTN 127
+PP++ + AAS + + Q + L D++L +L+ ++R DDA R N
Sbjct: 11 NPPLQTGNIQSDAASALPSSILQADFVELLKDSLLPSLVDTVKRSLIDDANRQN 64
>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
Length = 470
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 54 APERSPKVPLPGSHWTSGLSSP---PVRNETLTPPAASQVQPT 93
+P+ PK+ LP S +S P P++++ TP A + T
Sbjct: 357 SPDAPPKITLPAEDMLSSISGPAISPIQSKYSTPAQADEALST 399
>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 27.9 bits (59), Expect = 8.6
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 50 VSWPAPERSPKV-PLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVL 108
V+ P P R P PLP + L PPVR TPP T L V LP +
Sbjct: 849 VATPPPVRVPAATPLPVRVPVATL--PPVRLPVATPPPVRVPVATPLPLYVFLLLPLPLF 906
Query: 109 YTLLRKLERIRGDDAT 124
LL L +R AT
Sbjct: 907 VFLLLPLPPVRVPVAT 922
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.132 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,085,643
Number of Sequences: 59808
Number of extensions: 361375
Number of successful extensions: 1207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1201
Number of HSP's gapped (non-prelim): 15
length of query: 256
length of database: 16,821,457
effective HSP length: 81
effective length of query: 175
effective length of database: 11,977,009
effective search space: 2095976575
effective search space used: 2095976575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -