Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002187-TA|BGIBMGA002187-PA|IPR008705|Nanos RNA-binding
(256 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46828-7|CAA86860.1| 311|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U58758-15|AAB93424.1| 259|Caenorhabditis elegans Nanos related ... 32 0.46
U41105-7|AAA82402.2| 184|Caenorhabditis elegans Hypothetical pr... 32 0.46
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 30 1.9
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 30 1.9
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 3.3
U80952-3|AAB38093.1| 279|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 28 5.7
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr... 27 9.9
>Z46828-7|CAA86860.1| 311|Caenorhabditis elegans Hypothetical
protein R03D7.7 protein.
Length = 311
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 153 GRVACPVLRAFVCARCGARGDAAHTAKYCPRATRDE 188
GRV CP LR+ VC CGA GD AHT K+ A D+
Sbjct: 276 GRVVCPKLRSMVCGICGATGDNAHTTKHHLEAFGDD 311
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 121 DDATRTNE-ECRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAK 179
DD T +E C C++ A SH +R G + C ++ C C A G+ H
Sbjct: 690 DDVTSKSELHCYRCEHYQLPAEEVSSHNIRKDNGDLWCEHMKKIKCGHCEATGEQGHHPL 749
Query: 180 YCPRATRDERI 190
CP+ +ER+
Sbjct: 750 ICPKKKEEERV 760
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 121 DDATRTNE-ECRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAK 179
DD T +E C C++ A SH +R G + C ++ C C A G+ H
Sbjct: 687 DDVTSKSELHCYRCEHYQLPAEEVSSHNIRKDNGDLWCEHMKKIKCGHCEATGEQGHHPL 746
Query: 180 YCPRATRDERI 190
CP+ +ER+
Sbjct: 747 ICPKKKEEERV 757
>U58758-15|AAB93424.1| 259|Caenorhabditis elegans Nanos related
protein 2 protein.
Length = 259
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 154 RVACPVLRAFV-CARCGARGDAAHTAKYCP 182
R C L + C CGARG+ HT YCP
Sbjct: 183 RKKCDKLSSLAPCKICGARGEMNHTETYCP 212
>U41105-7|AAA82402.2| 184|Caenorhabditis elegans Hypothetical
protein T02G5.11 protein.
Length = 184
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 154 RVACPVLRAFV-CARCGARGDAAHTAKYCP 182
R C L + C CGARG+ HT YCP
Sbjct: 108 RKKCDKLSSLAPCKICGARGEMNHTETYCP 137
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQ 89
P+P R+P P P + LS PP T+ PP++S+
Sbjct: 24 PSPRRAP--PPPPHRKPASLSPPPDDENTIRPPSSSE 58
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 42 QWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPP---VRNETLTPPAASQVQPTEE 95
Q +T ++Q P P+ P S ++G S PP VR E L PP ++Q PT++
Sbjct: 103 QASTSTQQFHHPQRPPPPQYDQPSS--STGSSLPPLHTVRYEQLPPPPSNQRTPTQQ 157
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 38 DTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQL 97
++ +Q S Q P P P + PG+ +S +S+P + TPP Q+QP L
Sbjct: 362 ESDSQLRAQSMQCPMP-PMMMPPILPPGAS-SSAVSAP---HFIPTPPGVLQIQPGTTNL 416
Query: 98 R-VLSSLPDAVLYTLL 112
R V +PD+++ L+
Sbjct: 417 RQVRMWVPDSMIGALI 432
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 38 DTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQL 97
++ +Q S Q P P P + PG+ +S +S+P + TPP Q+QP L
Sbjct: 486 ESDSQLRAQSMQCPMP-PMMMPPILPPGAS-SSAVSAP---HFIPTPPGVLQIQPGTTNL 540
Query: 98 R-VLSSLPDAVLYTLL 112
R V +PD+++ L+
Sbjct: 541 RQVRMWVPDSMIGALI 556
>U80952-3|AAB38093.1| 279|Caenorhabditis elegans Hypothetical
protein F54H5.3 protein.
Length = 279
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 13 EFRLNGLDSPYN-PDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWT-S 70
+F + + SP + D IW T + + + P+ +PK P S T S
Sbjct: 100 QFIVQAMPSPGDFADRKFIWKQPNFLGIFTNTRVKTMRPAQSLPKSNPKSPAKVSTPTDS 159
Query: 71 GLSSPPVRNETLTPPA 86
G+SSP +E+L P+
Sbjct: 160 GMSSPVASSESLVTPS 175
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 46 YSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNET-----LTPPAASQVQPTEEQLRVL 100
Y SW A E++ K P P + GLS P+ +E LT A+S +P E +
Sbjct: 3562 YHNGESWKA-EKNIKPPKPVRNTKKGLSPEPIESEVHEIRLLTRVASSSEEPEEVDVIPA 3620
Query: 101 SSLP 104
S P
Sbjct: 3621 ESTP 3624
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 46 YSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNET-----LTPPAASQVQPTEEQLRVL 100
Y SW A E++ K P P + GLS P+ +E LT A+S +P E +
Sbjct: 3551 YHNGESWKA-EKNIKPPKPVRNTKKGLSPEPIESEVHEIRLLTRVASSSEEPEEVDVIPA 3609
Query: 101 SSLP 104
S P
Sbjct: 3610 ESTP 3613
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 46 YSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNET-----LTPPAASQVQPTEEQLRVL 100
Y SW A E++ K P P + GLS P+ +E LT A+S +P E +
Sbjct: 3551 YHNGESWKA-EKNIKPPKPVRNTKKGLSPEPIESEVHEIRLLTRVASSSEEPEEVDVIPA 3609
Query: 101 SSLP 104
S P
Sbjct: 3610 ESTP 3613
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 46 YSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNET-----LTPPAASQVQPTEEQLRVL 100
Y SW A E++ K P P + GLS P+ +E LT A+S +P E +
Sbjct: 3562 YHNGESWKA-EKNIKPPKPVRNTKKGLSPEPIESEVHEIRLLTRVASSSEEPEEVDVIPA 3620
Query: 101 SSLP 104
S P
Sbjct: 3621 ESTP 3624
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 46 YSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNET-----LTPPAASQVQPTEEQLRVL 100
Y SW A E++ K P P + GLS P+ +E LT A+S +P E +
Sbjct: 3551 YHNGESWKA-EKNIKPPKPVRNTKKGLSPEPIESEVHEIRLLTRVASSSEEPEEVDVIPA 3609
Query: 101 SSLP 104
S P
Sbjct: 3610 ESTP 3613
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 46 YSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNET-----LTPPAASQVQPTEEQLRVL 100
Y SW A E++ K P P + GLS P+ +E LT A+S +P E +
Sbjct: 3551 YHNGESWKA-EKNIKPPKPVRNTKKGLSPEPIESEVHEIRLLTRVASSSEEPEEVDVIPA 3609
Query: 101 SSLP 104
S P
Sbjct: 3610 ESTP 3613
>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
protein F28B4.3 protein.
Length = 2229
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 5 CSLDDAMKEFRLNGLDSPYNPDEDNIWS 32
C+ K++ L G+ S YNPD D WS
Sbjct: 698 CTFKVYQKKYNLGGM-SQYNPDYDIFWS 724
>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
protein C36B1.8b protein.
Length = 1052
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 19 LDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVR 78
L S N +NI S R D+ S + SP+ P PGS+ S ++ P
Sbjct: 474 LSSSVNGISNNIPSDRQQLDSKPNTARGSSGNINQSNTTSPE-PEPGSNHISTTAANPAH 532
Query: 79 NETLTPPAASQVQPTEEQLRVLSSLP-DAVLYTLL 112
++T P + P E +L + S L + +YTL+
Sbjct: 533 PTSVTVPQSVPPVPQEPELFLKSVLDLTSYIYTLM 567
>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
protein C36B1.8a protein.
Length = 1049
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 19 LDSPYNPDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVR 78
L S N +NI S R D+ S + SP+ P PGS+ S ++ P
Sbjct: 474 LSSSVNGISNNIPSDRQQLDSKPNTARGSSGNINQSNTTSPE-PEPGSNHISTTAANPAH 532
Query: 79 NETLTPPAASQVQPTEEQLRVLSSLP-DAVLYTLL 112
++T P + P E +L + S L + +YTL+
Sbjct: 533 PTSVTVPQSVPPVPQEPELFLKSVLDLTSYIYTLM 567
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.132 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,454,778
Number of Sequences: 27539
Number of extensions: 261709
Number of successful extensions: 717
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 21
length of query: 256
length of database: 12,573,161
effective HSP length: 80
effective length of query: 176
effective length of database: 10,370,041
effective search space: 1825127216
effective search space used: 1825127216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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