GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002187-TA|BGIBMGA002187-PA|IPR008705|Nanos RNA-binding
         (256 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              98   8e-23
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   8.3  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 97.9 bits (233), Expect = 8e-23
 Identities = 39/59 (66%), Positives = 46/59 (77%)

Query: 129 ECRFCKNNGERAAYYRSHALRDAAGRVACPVLRAFVCARCGARGDAAHTAKYCPRATRD 187
           EC FC+NNGE  AYYR H L+DA GRV+CPVLRA+ C  CGA GD AHT KYCP+ T++
Sbjct: 39  ECVFCRNNGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIAHTVKYCPKGTKN 97



 Score = 28.7 bits (61), Expect = 0.055
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 11 MKEFRLNGLDSPYNPDEDNI 30
          M+EFR NG D  Y PD DN+
Sbjct: 1  MEEFRHNGRDFEYCPDLDNV 20


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 68  WTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDA 106
           W  G +   +R  TL PP   +VQ   +        PD+
Sbjct: 625 WFDGFNWEGLRARTLEPPIMPRVQNATDTTNFDEYPPDS 663


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 81  TLTPPAASQVQPTEEQLRVLSSLPDAV 107
           TLT    S++   E  ++V+S  PD V
Sbjct: 170 TLTDCLRSELAQCESNIKVISISPDLV 196


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,111
Number of Sequences: 429
Number of extensions: 3218
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 256
length of database: 140,377
effective HSP length: 56
effective length of query: 200
effective length of database: 116,353
effective search space: 23270600
effective search space used: 23270600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)