Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002187-TA|BGIBMGA002187-PA|IPR008705|Nanos RNA-binding
(256 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing p... 32 0.33
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 31 0.57
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 31 0.57
At3g32904.1 68416.m04164 hypothetical protein 31 0.76
At1g64340.1 68414.m07291 hypothetical protein 31 0.76
At5g47430.1 68418.m05844 expressed protein 30 1.3
At2g40190.1 68415.m04942 glycosyl transferase family 1 protein c... 30 1.8
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 29 2.3
At5g23650.1 68418.m02773 myb family transcription factor contain... 29 4.0
At5g08370.1 68418.m00986 alpha-galactosidase, putative / melibia... 29 4.0
At1g23540.1 68414.m02960 protein kinase family protein contains ... 29 4.0
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 28 5.3
At4g34440.1 68417.m04894 protein kinase family protein contains ... 28 5.3
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 5.3
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 5.3
At1g02850.4 68414.m00250 glycosyl hydrolase family 1 protein con... 28 5.3
At5g64540.1 68418.m08111 hypothetical protein 28 7.1
At4g35985.1 68417.m05121 senescence/dehydration-associated prote... 28 7.1
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 28 7.1
>At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing
protein similar to brahma associated protein 60 kDa
[Drosophila melanogaster] GI:3378134, SWI/SNF-related,
matrix-associated, actin-dependent regulator of
chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
profile PF02201: BAF60b domain of the SWIB complex
Length = 534
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 56 ERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEE---QLRVLSSLPDAVLYTLL 112
++ P + PG+ ++ SP +R LTP A + Q E Q RV + LP++ LYT L
Sbjct: 111 QQKPPMRPPGAPASNNTISP-MRTMELTPAARKKKQKLPEKSLQERVAAILPESALYTQL 169
Query: 113 RKLE 116
+ E
Sbjct: 170 LEFE 173
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 31.5 bits (68), Expect = 0.57
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 25 PDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLP------GSHWTSGLSSP--P 76
P E + +A ++ D T + T + V+ AP + P P +W S ++P P
Sbjct: 273 PPEVKLETALSLIDFDTDFETPAPSVAIQAPLSTTSQPAPQPTTSSNDNWASFDAAPSAP 332
Query: 77 VRNETLTPPAASQVQPTEEQLRVLSSLP 104
N + PP+ + + QL V SS+P
Sbjct: 333 SLNVSQPPPSGNTLDSLLSQLAVTSSVP 360
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 31.5 bits (68), Expect = 0.57
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 25 PDEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLP------GSHWTSGLSSP--P 76
P E + +A ++ D T + T + V+ AP + P P +W S ++P P
Sbjct: 273 PPEVKLETALSLIDFDTDFETPAPSVAIQAPLSTTSQPAPQPTTSSNDNWASFDAAPSAP 332
Query: 77 VRNETLTPPAASQVQPTEEQLRVLSSLP 104
N + PP+ + + QL V SS+P
Sbjct: 333 SLNVSQPPPSGNTLDSLLSQLAVTSSVP 360
>At3g32904.1 68416.m04164 hypothetical protein
Length = 330
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 39 TSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQ 89
T+ QWN+ S W P +P+ P S SS P + +PP A Q
Sbjct: 282 TAPQWNSPSNVPQWTIPPTTPQWGTPSS--MPQWSSSPTAPQLSSPPTAPQ 330
>At1g64340.1 68414.m07291 hypothetical protein
Length = 265
Score = 31.1 bits (67), Expect = 0.76
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 30 IWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQ 89
+W + S + N+++RQ++ + + +P H LSSPP +ET + Q
Sbjct: 122 VWDCESTLYDSFELNSFNRQLNSAISSSARSMSMP--H----LSSPPPPSETTSSSTKKQ 175
Query: 90 VQPTEEQLRVLSSL 103
PT++ R L L
Sbjct: 176 QSPTKKISRSLGKL 189
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 44 NTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSL 103
N S S P +S + P P H P R PP + P+ + R
Sbjct: 638 NGTSASASSINPNKSRQAPPPPIHDYDRRRRPEKRLSPEHPPTRKNISPSRDSKRKSERY 697
Query: 104 PDAVLYTLLRKLERIRGDDATRTNEECRFCKNNGERAAYYRSH 146
PD R ER R D R ++ R + + +R+ +R H
Sbjct: 698 PDE--RDRQRDRERSRHQDVDREHDRTR-DRRDEDRSRDHRHH 737
>At2g40190.1 68415.m04942 glycosyl transferase family 1 protein
contains Pfam profile: PF00534 Glycosyl transferases
group 1
Length = 463
Score = 29.9 bits (64), Expect = 1.8
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 11/123 (8%)
Query: 30 IWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQ 89
+ S +A ++ W +V W PER +V P TSGL + P+ + P S
Sbjct: 217 VGSCTHLAMVNSSWTKSHIEVLWRIPERITRVYPPCD--TSGLQAFPLERSSDPPKIISV 274
Query: 90 VQPTEEQLRVLSSLPDAVLYTLLRKLERIRGDDATRTNEECRFCKNNGERAAYYRSHALR 149
Q E+ +L L LE++ D + C+NN + R L+
Sbjct: 275 AQFRPEKAHMLQ------LEAFSLALEKLDADVPRPKLQFVGSCRNNSDEE---RLQKLK 325
Query: 150 DAA 152
D A
Sbjct: 326 DRA 328
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEE 95
P PE SP VP P +S +SSPPV P A P +
Sbjct: 85 PVPESSPPVPAPMV--SSPVSSPPVPAPVADSPPAPVAAPVAD 125
>At5g23650.1 68418.m02773 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 337
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 19 LDSPYNPDEDNIWSARA---VADTSTQWNTYSRQVSWPAPERS-PKVPLPGSHWTSGLSS 74
LD P +NIW+A+A ++ S TY + W S P +P + TS +S
Sbjct: 225 LDIPIYGTHNNIWNAQATQVISQPSQNHPTYDAPIIWNTQVASQPSANIP-MYGTSTISQ 283
Query: 75 PPV 77
P V
Sbjct: 284 PMV 286
>At5g08370.1 68418.m00986 alpha-galactosidase, putative / melibiase,
putative / alpha-D-galactoside galactohydrolase,
putative similar to alpha-galactosidase SP:Q42656 from
[Coffea arabica]
Length = 396
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 27 EDNIWSARAVADTSTQWNTYSRQVSWPAPE 56
+DN S +AD + +W +Y+R SW P+
Sbjct: 218 QDNWKSMTLIADQNDRWASYARPGSWNDPD 247
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 37 ADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQ 96
ADT+ T S + P + SP P S SS P +E TPP SQ+ P
Sbjct: 17 ADTAPPPETPSENSALPPVDSSPPSPPADS------SSTPPLSEPSTPPPDSQLPPLPSI 70
Query: 97 LRVLSSLP 104
L L+ P
Sbjct: 71 LPPLTDSP 78
>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein
Length = 911
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 26 DEDNIWSARAVADTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGL--SSPPVRNETLT 83
++D I SAR +A+ T +TY+ +V P S + W S + SS P +ET
Sbjct: 722 EDDIIDSARLLAEEETAASTYTEEVDTPVGSSSEE---SDDFWKSFINPSSSPSPSETEN 778
Query: 84 PPAASQVQPTEE 95
+ +P E
Sbjct: 779 MNKVADTEPKAE 790
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVR-NETLTPPAASQVQPTEEQLRVLSSLP 104
P+ E SP P P S S +S+PP + + +PP A Q T SS P
Sbjct: 26 PSNESSPPTP-PSSPPPSSISAPPPDISASFSPPPAPPTQETSPPTSPSSSPP 77
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 62 PLPGSHWTSGLSSPPVRNETLT-PPAASQVQPT 93
P PG+ + SPP + T T PPAAS PT
Sbjct: 5 PSPGTTPSPSPPSPPTNSTTTTPPPAASSPPPT 37
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 53 PAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDA 106
PAP R + P P + S P R + +PPA PT + S P A
Sbjct: 304 PAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPA 357
>At1g02850.4 68414.m00250 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to hydroxyisourate hydrolase (GI:19569603)
[Glycine max]
Length = 471
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 74 SPPV---RNETLTPPAASQVQPTEEQLRVLSSLPDAVLYTLLRKLERIRG 120
+PPV N +TP ++S V T +++ LSS AVL++L RK ++G
Sbjct: 365 NPPVYILENGQMTPHSSSLVDTT--RVKYLSSYIKAVLHSLSRKGSDVKG 412
>At5g64540.1 68418.m08111 hypothetical protein
Length = 440
Score = 27.9 bits (59), Expect = 7.1
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 38 DTSTQWNTYSRQVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQL 97
+TST +T+S S + ++P S + GL + + + +P A + + + L
Sbjct: 316 NTSTTTSTHSSSPSVDRLDTVAQIPDLSSSPSDGLETMTQKPDLASPSAGRETETQKPGL 375
Query: 98 RVLSSLPDAVLYTLLRKLERIRGDDA--TRTNEECRFCKNN 136
+LP A L T+ R + DD T T ++ F K++
Sbjct: 376 ----ALPSAGLRTMTRNKDWSPSDDGLPTFTQDQLVFMKSH 412
>At4g35985.1 68417.m05121 senescence/dehydration-associated
protein-related similar to senescence-associated protein
12 [Hemerocallis hybrid cultivar]
gi|3551958|gb|AAC34857; similar to early-responsive to
dehydration stress ERD7 protein [Arabidopsis thaliana]
gi|15320412|dbj|BAB63916
Length = 448
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 49 QVSWPAPERSPKVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPTEEQLRVLSSLPDAVL 108
++ WP + P V + SH+ L PV+ + + ++ + E L ++
Sbjct: 117 EIQWPLTKDEPAVKVDESHYFFSLR--PVKESESSDHSVNETE--NEMLNYGLTMASKGQ 172
Query: 109 YTLLRKLERIRGDDATRTNEE 129
+L KL++I D ++ T EE
Sbjct: 173 EPMLEKLDKILADYSSFTAEE 193
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 27.9 bits (59), Expect = 7.1
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 78 RNETLTPPAASQVQPTEEQLRVLSSLPDA---VLYTLLRKLERIRG--DDATRTNEECRF 132
R L PA S E + R+LS PDA V++ L L +R DD N
Sbjct: 57 RGARLVLPARSVKTAEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESLNLPLNI 116
Query: 133 CKNNGERAAYYRSHALRD 150
NN + Y HAL +
Sbjct: 117 LINNAGK--YAHKHALSE 132
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.132 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,181,090
Number of Sequences: 28952
Number of extensions: 251433
Number of successful extensions: 776
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 762
Number of HSP's gapped (non-prelim): 27
length of query: 256
length of database: 12,070,560
effective HSP length: 80
effective length of query: 176
effective length of database: 9,754,400
effective search space: 1716774400
effective search space used: 1716774400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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