GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002186-TA|BGIBMGA002186-PA|IPR012335|Thioredoxin fold,
IPR000866|Alkyl hydroperoxide reductase/ Thiol specific antioxidant/
Mal allergen, IPR012336|Thioredoxin-like fold
         (195 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.8  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   2.8  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   2.8  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   2.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   6.5  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/26 (38%), Positives = 11/26 (42%)

Query: 168 VCPANWRPGAKTIKPDTKAAQEYFGD 193
           V   NW P  K+ KP  K  Q    D
Sbjct: 570 VALTNWHPSDKSAKPMLKPWQRVLPD 595


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 130 DDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGE 167
           ++ + L++  +NDL   R V E++  V+  +     GE
Sbjct: 65  EEAETLKRYKLNDLEKRREVYESIFKVEVHEALMSRGE 102


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 130 DDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGE 167
           ++ + L++  +NDL   R V E++  V+  +     GE
Sbjct: 225 EEAETLKRYKLNDLEKRREVYESIFKVEVHEALMSRGE 262


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 130 DDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGE 167
           ++ + L++  +NDL   R V E++  V+  +     GE
Sbjct: 225 EEAETLKRYKLNDLEKRREVYESIFKVEVHEALMSRGE 262


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 116 DEETGIPFRGLFIIDDKQN 134
           D ++ +PF GLFI +   N
Sbjct: 15  DSDSKLPFSGLFIENQAGN 33


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,011
Number of Sequences: 317
Number of extensions: 1889
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 195
length of database: 114,650
effective HSP length: 54
effective length of query: 141
effective length of database: 97,532
effective search space: 13752012
effective search space used: 13752012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)