GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002186-TA|BGIBMGA002186-PA|IPR012335|Thioredoxin fold,
IPR000866|Alkyl hydroperoxide reductase/ Thiol specific antioxidant/
Mal allergen, IPR012336|Thioredoxin-like fold
         (195 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   276   2e-75
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   0.79 
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    27   1.8  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   2.4  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.4  
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    26   4.2  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   7.4  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   9.7  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  276 bits (676), Expect = 2e-75
 Identities = 127/191 (66%), Positives = 156/191 (81%), Gaps = 2/191 (1%)

Query: 1   MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 60
           M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A 
Sbjct: 1   MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60

Query: 61  EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 120
           +F +   +V+  STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61  KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120

Query: 121 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 180
           + FRGLF+ID K  LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW  G+ TI
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI 180

Query: 181 KPDTKAAQEYF 191
             DTK  ++YF
Sbjct: 181 --DTKNPEKYF 189


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 133 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 189
           +NL++I +  LPVG  +++   LR V     T K+G++      P  K+   + K   E
Sbjct: 92  KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKSGVANEKYTSE 150


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 34  YVVLFFYPL--DFTFV--CPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAW-INTPR 88
           +V+ FF  +  D+ +V   P  I   S      +    +V+G +TD+      W  + PR
Sbjct: 105 FVLCFFGNVSGDYGYVDNVPLHISVISHFYPCLQSYNTDVIGITTDTVENICQWKAHLPR 164

Query: 89  KQGGLGPMNIPLISDKSHRISRDYGVLDEETG--IPFRGLFIIDDKQNLRQI 138
                   ++P+ISD ++ I R+ G+L    G  +    + IID     R I
Sbjct: 165 AL----QFSLPVISDSNNEICREMGMLHPLGGAKLALDAIVIIDSIGRRRDI 212


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 8   PAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 51
           P P F+  +  +G+F   S +  K K V L  YP   TF   TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 136 RQITINDLPV--GRSVEETLRLVQAFQFTDKHGEVCPANW 173
           R IT+++L V  GR     L L+  F  + K G +  A+W
Sbjct: 853 RIITVSELSVRFGRDFRAQLALLVLFWISSKFGNIIDASW 892


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 2   PLQMTKPAPQ--FKATAVVNGEFKDISLSDYKG-----------KYVVLFFYPLDFTFVC 48
           P+ + KPA      +T  V     DI+L D  G           K +V+F YP   T  C
Sbjct: 30  PVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGC 89

Query: 49  PTEIIAFSEKADEFRKIGCEVLGASTDS 76
             +   F +   + +    EVLG S D+
Sbjct: 90  TKQGCGFRDNYPKIQASDYEVLGLSFDT 117


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 91  GGLGPMNIPLISDKS 105
           GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 98  IPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQN 134
           IPL +D     S +    DEE     R  FI++D+++
Sbjct: 43  IPLDNDNDENDSSEESATDEEAERQVREGFIVEDEED 79


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 45  TFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFT 79
           TF   T +    E  DEF ++G +VLG   D+  T
Sbjct: 556 TFGGQTALNVGIELKDEFEQLGVKVLGTPIDTIIT 590


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 936,283
Number of Sequences: 5004
Number of extensions: 38941
Number of successful extensions: 61
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 9
length of query: 195
length of database: 2,362,478
effective HSP length: 69
effective length of query: 126
effective length of database: 2,017,202
effective search space: 254167452
effective search space used: 254167452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)