GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002186-TA|BGIBMGA002186-PA|IPR012335|Thioredoxin fold,
IPR000866|Alkyl hydroperoxide reductase/ Thiol specific antioxidant/
Mal allergen, IPR012336|Thioredoxin-like fold
         (195 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   280   6e-76
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)             158   2e-39
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             129   1e-30
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   1e-15
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                46   2e-05
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           31   0.63 
SB_20290| Best HMM Match : ig (HMM E-Value=2.9e-15)                    29   1.9  
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)           28   5.9  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         27   7.7  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  280 bits (686), Expect = 6e-76
 Identities = 127/174 (72%), Positives = 147/174 (84%), Gaps = 1/174 (0%)

Query: 7   KPAPQFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKI 65
           KPAP F  TAV  +GEF D+ LSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++ DEF+ I
Sbjct: 55  KPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRVDEFKAI 114

Query: 66  GCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRG 125
            CEV+  S DS ++HLAW N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+  RG
Sbjct: 115 NCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRG 174

Query: 126 LFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKT 179
           LFIIDDK  LRQITINDLPVGRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 175 LFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 228


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score =  158 bits (384), Expect = 2e-39
 Identities = 71/95 (74%), Positives = 83/95 (87%)

Query: 85  NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLP 144
           N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+  RGLFIIDDK  LRQITINDLP
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62

Query: 145 VGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKT 179
           VGRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 63  VGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 97


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  129 bits (312), Expect = 1e-30
 Identities = 56/80 (70%), Positives = 69/80 (86%)

Query: 4   QMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 63
           Q++KPAP ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55  QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114

Query: 64  KIGCEVLGASTDSHFTHLAW 83
            I  EV+G S DS FTHLAW
Sbjct: 115 AINTEVVGCSVDSVFTHLAW 134



 Score = 77.4 bits (182), Expect = 7e-15
 Identities = 36/41 (87%), Positives = 39/41 (95%)

Query: 125 GLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKH 165
           GLFIIDDK  LRQIT+NDLPVGRSV+ETLRLVQAFQ+TDKH
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 34/47 (72%), Positives = 39/47 (82%)

Query: 145 VGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 191
           VGRSV+ETLRLVQAFQ+TDKHGEVCPA W+PG  TI PD    ++YF
Sbjct: 1   VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPDPTQKKKYF 47


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 12/131 (9%)

Query: 71  GASTDSHFTHLAWINTPRKQG-----GLGPMNIPLISDKSHRISRDYGVLD----EETGI 121
           G S D   +H  W+    K            N P+I+D+   ++   G++D    +  G+
Sbjct: 3   GLSCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGL 62

Query: 122 PF--RGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAK- 178
           P   R +FII   + L+   +     GR+ +E LR++ + Q T       P +W+ G   
Sbjct: 63  PLTCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKLGGDC 122

Query: 179 TIKPDTKAAQE 189
            + P  K  +E
Sbjct: 123 MVIPSIKPEEE 133


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 101 ISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGR-SVEE--TLRLVQ 157
           + DKS    R +  LD+  GI   G  ++ +  N+ +ITIN+    +  ++   TL  V 
Sbjct: 137 VQDKSG--IRIFSDLDDAHGIIDFGKRLLTEDTNIIEITINNTSTTQVKIKRFSTLEEVP 194

Query: 158 AFQFTDKHG 166
            F F+DKHG
Sbjct: 195 EFSFSDKHG 203


>SB_20290| Best HMM Match : ig (HMM E-Value=2.9e-15)
          Length = 978

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 98  IPLISDKSHRISRDYGV-LDEETGIPFRG 125
           +P I D SH ISRD  V LD+    P+RG
Sbjct: 592 VPSIYDASHAISRDCQVRLDDRRHYPYRG 620


>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
          Length = 334

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 103 DKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--TIND 142
           D    ++  Y V+D+ET I   GL  I +K+N +++  T ND
Sbjct: 275 DTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRTRND 316


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/41 (31%), Positives = 26/41 (63%)

Query: 99   PLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQIT 139
            P ++DK+  ++ D GV  + +GI F G   I++ Q+L +++
Sbjct: 1590 PTVADKNQYLTIDLGVEVKLSGIAFGGKSGINESQSLVRVS 1630


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,770,437
Number of Sequences: 59808
Number of extensions: 273016
Number of successful extensions: 390
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 10
length of query: 195
length of database: 16,821,457
effective HSP length: 78
effective length of query: 117
effective length of database: 12,156,433
effective search space: 1422302661
effective search space used: 1422302661
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)