GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002186-TA|BGIBMGA002186-PA|IPR012335|Thioredoxin fold,
IPR000866|Alkyl hydroperoxide reductase/ Thiol specific antioxidant/
Mal allergen, IPR012336|Thioredoxin-like fold
         (195 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   312   8e-86
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   268   2e-72
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    72   3e-13
Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein...    29   1.6  
Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein...    29   1.6  
Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical p...    29   2.2  
AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical ...    28   3.8  
AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical ...    28   3.8  
AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine re...    27   6.6  
AF039041-7|AAB94189.2|  448|Caenorhabditis elegans Hypothetical ...    27   6.6  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  312 bits (767), Expect = 8e-86
 Identities = 143/185 (77%), Positives = 160/185 (86%)

Query: 7   KPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIG 66
           KPAPQFK  AVV+GEF D+SLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++A+EF+ I 
Sbjct: 8   KPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAIN 67

Query: 67  CEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGL 126
             VL ASTDS F+HLAWIN PRK GGLG MNIP+++D +H+ISRDYGVL E+ GI FRGL
Sbjct: 68  TVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGL 127

Query: 127 FIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKA 186
           FIID  QNLRQITINDLPVGRSV+ETLRLVQAFQF +KHGEVCPA W PG+ TIKP  K 
Sbjct: 128 FIIDPSQNLRQITINDLPVGRSVDETLRLVQAFQFVEKHGEVCPAGWTPGSDTIKPGVKE 187

Query: 187 AQEYF 191
           +QEYF
Sbjct: 188 SQEYF 192


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  268 bits (657), Expect = 2e-72
 Identities = 117/194 (60%), Positives = 152/194 (78%)

Query: 2   PLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADE 61
           PL      P FK TAVV+G+FK IS  DYKGK++V+FFYPLDFTFVCPTEIIA+ ++A+E
Sbjct: 32  PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANE 91

Query: 62  FRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGI 121
           FR +G EV+  S DSHF+HLAW+NTPRK GGLG M+IPL++D + +I+  +GVLD+E+G+
Sbjct: 92  FRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGL 151

Query: 122 PFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIK 181
            +RGLF+ID    +R  T NDLPVGRSV+ETLR+++AFQF+DKHGEVCPA+W   + TIK
Sbjct: 152 SYRGLFLIDPSGTVRHTTCNDLPVGRSVDETLRVLKAFQFSDKHGEVCPADWHEDSPTIK 211

Query: 182 PDTKAAQEYFGDAN 195
           P    ++EYF   N
Sbjct: 212 PGVATSKEYFNKVN 225


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 11/169 (6%)

Query: 23  KDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHL 81
           K+ +L +Y G+ +++LF +P DFT VC TE+    + A EFRK   ++L  S DS  TH 
Sbjct: 18  KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHR 77

Query: 82  AW---INTPRKQGGLGP-MNIPLISDKSHRISRDYGVLD------EETGIPFRGLFIIDD 131
            W   IN+  +    G  +   +I+D    I  + G++D      E   +  R + +   
Sbjct: 78  DWAKDINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPDEMNSEGICLSARAVMLFGP 137

Query: 132 KQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 180
            + L+   +     GR+  E LR+V   Q   K     PANW  G   I
Sbjct: 138 DKKLKSKILYPATFGRNFVEILRMVDGVQLGTKAPVATPANWIAGDNVI 186


>Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical
           protein M106.5 protein.
          Length = 270

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 79  THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 138
           T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I D +  +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225

Query: 139 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 168
           TIN++  G+    T +++   + T+K  E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251


>Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 79  THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 138
           T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I D +  +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225

Query: 139 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 168
           TIN++  G+    T +++   + T+K  E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251


>Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 79  THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 138
           T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I D +  +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225

Query: 139 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 168
           TIN++  G+    T +++   + T+K  E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251


>Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical
          protein F26E4.12 protein.
          Length = 163

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 17 VVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 70
          V N    D+SLSDYKGK V++         +         E  D ++K G EVL
Sbjct: 9  VKNANGDDVSLSDYKGK-VLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVL 61


>AL008868-3|CAH04724.1|  362|Caenorhabditis elegans Hypothetical
           protein C53C7.1b protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 133 QNLRQITIND-LPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 177
           Q L+ I+ N  + VG SV   ++  +  QF +  GE C  NW P A
Sbjct: 142 QALKMISFNSAISVGLSVPLFMKQ-ELMQFRNYCGEYCSENWGPDA 186


>AL008868-2|CAA15513.1|  365|Caenorhabditis elegans Hypothetical
           protein C53C7.1a protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 133 QNLRQITIND-LPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 177
           Q L+ I+ N  + VG SV   ++  +  QF +  GE C  NW P A
Sbjct: 142 QALKMISFNSAISVGLSVPLFMKQ-ELMQFRNYCGEYCSENWGPDA 186


>AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine
           receptor, class v protein19 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 12  FKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLG 71
           + A++  +GE +D+ L     KY  L +  L  +F+ P  I+ F+   D FRK+   + G
Sbjct: 292 YLASSYYSGEIEDMELIVLTRKYFPLVYGTL--SFIGPFTILIFNN--DVFRKVRFMIFG 347


>AF039041-7|AAB94189.2|  448|Caenorhabditis elegans Hypothetical
           protein W03F8.2 protein.
          Length = 448

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 130 DDKQNLRQITINDLPVGRSVEETLRL-VQAFQFTDKHGEVCPANWRPGAKTIK 181
           DDK+ + +   N+ PV   VEE + + V+A Q TD   E+     +P  K  K
Sbjct: 94  DDKKEVEEKKENEKPVDVKVEEKVMVKVEATQNTDNSQELKAPEEKPKKKKKK 146


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,118,335
Number of Sequences: 27539
Number of extensions: 215319
Number of successful extensions: 417
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 11
length of query: 195
length of database: 12,573,161
effective HSP length: 78
effective length of query: 117
effective length of database: 10,425,119
effective search space: 1219738923
effective search space used: 1219738923
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)