GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002186-TA|BGIBMGA002186-PA|IPR012335|Thioredoxin fold,
IPR000866|Alkyl hydroperoxide reductase/ Thiol specific antioxidant/
Mal allergen, IPR012336|Thioredoxin-like fold
         (195 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   0.84 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   3.4  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   3.4  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   4.5  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 70  LGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFR-GLFI 128
           L  S D +  H      P  QG    ++     D   +I+R+ G+   +T        FI
Sbjct: 278 LEKSNDYYAFHFEGEKGPNSQGPSSVIDTNTGVDYFTQINRN-GIACWDTNTELNPNTFI 336

Query: 129 IDDKQNLRQITINDLPVGRSVEETLRLVQAFQ 160
           +  + N   +  NDL + RS      L   FQ
Sbjct: 337 LVAENNTTMVFCNDLSIDRSTNTMYVLSDNFQ 368


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 56 SEKADEFRKIGCEVLGASTDSHFTHL 81
          +E+ +E+R + CE +  S +S  TH+
Sbjct: 30 AERQEEYRCVICERVYCSRNSLMTHI 55


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 15   TAVVNGEFKDISLSDY 30
            T +++  FKD+ LSD+
Sbjct: 1401 TPIMDAHFKDVKLSDF 1416


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
          protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 35 VVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 70
          V +   P++  F  P E     E+AD  R++ C++L
Sbjct: 15 VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLL 49


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
          precursor protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 35 VVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 70
          V +   P++  F  P E     E+AD  R++ C++L
Sbjct: 15 VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLL 49


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 49 PTEIIAFSEKADEFRKIGCEVL 70
          P E     E+AD  R++ C++L
Sbjct: 3  PLEHFENEERADRHRRVTCDLL 24


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,923
Number of Sequences: 429
Number of extensions: 2192
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 195
length of database: 140,377
effective HSP length: 54
effective length of query: 141
effective length of database: 117,211
effective search space: 16526751
effective search space used: 16526751
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)