Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002185-TA|BGIBMGA002185-PA|IPR002018|Carboxylesterase,
type B
         (575 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    57   5e-10
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      29   0.10 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.24 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   5.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   5.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   6.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   6.9  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 56.8 bits (131), Expect = 5e-10
 Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 31/219 (14%)

Query: 90  FSGDDVQYGIEADRRSKILKSFVRNTYSYHLSEILATIIN-EYTDWEKPVQHPINIRDET 148
           F  D   + +E +R   I+ +  +N     +S+I    I  +YTDWE+ V +    +   
Sbjct: 395 FEKDQASF-LERERFLGIINNIFKN-----MSQIEREAITFQYTDWEE-VYNGYIYQKMV 447

Query: 149 LEALSDAQVVAPMVLTADTHSALRRNSYLYVFDYQTKYGDYPQRQGCIHGEELPYIFGAP 208
            + + D   + P +  A   +      Y Y F  +T    + +  G +HG+E+ Y+FG P
Sbjct: 448 ADVVGDYFFICPSIHFAQLFADRGMKVYYYFFTQRTSTNLWGEWMGVLHGDEVEYVFGHP 507

Query: 209 LVGGLAHFPRNYTKAEVGLSESVMLYWGNFAKTGNPNEAQETDPIRAGRQERVRMKNIEW 268
           L   L      Y+  E  LS  ++LY+  FA  G P +                 ++ EW
Sbjct: 508 LNKSL-----KYSDKERDLSLRMILYFSEFAYLGKPTK-----------------EDSEW 545

Query: 269 TAYEAVHKKYLNIDI-KSKLKNHYRAHRLSFWLNLVPDL 306
            +Y     KY   D  K+ L    R    +FW   +P L
Sbjct: 546 PSYSRDEPKYFIFDAEKTGLGKGPRTTYCAFWNEFLPKL 584


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 0.10
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 275 HKKYLNIDIKSKLKNHYRAHRLSFWLNLVPDLHRPGGEDVPPAH-HQLENEDNSIQPTPK 333
           + + L+ +  S L +H R    + +L   P ++  GGE++ P   HQ  +  +S++  P+
Sbjct: 116 YDRRLHDNSPSFLSDHSRDQEQNLYLTPSPQMYSSGGEEITPRQSHQSYHHMDSVEYKPE 175


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 0.24
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 454 ENGQMPNNICGDLEGALSYQTSLKNDPATILXXXXXXXXXQLPPPEFADLPGNNVAGMAT 513
           EN Q   N C D +   S  TS+K +P +I+          L P E      +N  G ++
Sbjct: 872 ENNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESSKKV-LSPGELLSSCVSNDGGCSS 930

Query: 514 LPRAPPP 520
           L     P
Sbjct: 931 LVDVSTP 937


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 403 YSTALSVTIAIGCSLLILNVLIFAGVYY 430
           Y+TAL   + +     I  +L FAGV+Y
Sbjct: 303 YATALDWFLLMSFGYCIATLLEFAGVHY 330


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 130 EYTDWEKPVQHPINIRDETLEALSD 154
           EYTD+ K V    N+ +ETL  +SD
Sbjct: 210 EYTDFLKSVPIFKNLPEETLIKISD 234


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 303 VPDLHRPGGEDVPPAHHQLENEDNSIQPTPKTYSPAFKKTTDVI 346
           VP  H+PG  +       LE    ++   P T  P  ++  + +
Sbjct: 709 VPQSHQPGAMEQVSYLTSLERTQPTMSQMPPTAQPRMERLAEAV 752


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 534 QLQENQPLLSAHQMQ 548
           +LQEN PLL   Q+Q
Sbjct: 226 RLQENSPLLDLRQLQ 240


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 516  RAPPPPKIGKTINTLASGQLQENQPLLSAH 545
            R PPPP++G        G   E  P  + H
Sbjct: 1700 RCPPPPRMGSAEGLSHRGMEDEICPYATFH 1729


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,249
Number of Sequences: 429
Number of extensions: 8453
Number of successful extensions: 40
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 8
length of query: 575
length of database: 140,377
effective HSP length: 61
effective length of query: 514
effective length of database: 114,208
effective search space: 58702912
effective search space used: 58702912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)