Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002185-TA|BGIBMGA002185-PA|IPR002018|Carboxylesterase,
type B
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 30 4.4
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 30 4.4
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236 30 4.4
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 30 5.8
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 30 5.8
04_04_1292 - 32413046-32413807,32413901-32413936,32414037-324141... 29 7.6
04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042 29 7.6
03_06_0341 - 33261210-33261327,33261411-33262057,33262950-332630... 29 7.6
03_02_0035 + 5176365-5176501,5176676-5176775,5176852-5176887,517... 29 7.6
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 30.3 bits (65), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 501 ADLPGNNVAGMATLPRAPPPPKI 523
+ +PG AG +TLP PPPP +
Sbjct: 190 SSMPGTEEAGPSTLPPPPPPPPL 212
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 30.3 bits (65), Expect = 4.4
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 39 GGQTVAHAPVGKQAQNAINIINAVLMRKSAVAQLTKYDLMLGVTKAEAYFAFSGDD 94
GG + A P+GK A + I + SAV +L + L G T E G+D
Sbjct: 3 GGSSPAIRPIGKSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVTLRSYGED 58
>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
Length = 1096
Score = 30.3 bits (65), Expect = 4.4
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 404 STALSVTIAIGCSLLILNVLIFAGVYYQRDKTRMNGQDGHNNGSHLK 450
S L V I+I +L+L +L+ ++QR+KT+ N SHL+
Sbjct: 723 SLKLIVAISISSGILLLILLLALFAFWQRNKTQAKSDLALINDSHLR 769
>12_01_0029 +
248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 29.9 bits (64), Expect = 5.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 275 HKKYLNIDIKSKLKNHYRAHRLSFWLNLVPDL 306
H + NI+ K+K+K+H ++ FW + P L
Sbjct: 93 HLQIFNIEAKTKIKSHQMPEQVVFWKWITPKL 124
>11_01_0030 +
233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 29.9 bits (64), Expect = 5.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 275 HKKYLNIDIKSKLKNHYRAHRLSFWLNLVPDL 306
H + NI+ K+K+K+H ++ FW + P L
Sbjct: 93 HLQIFNIEAKTKIKSHQMPEQVVFWKWITPKL 124
>04_04_1292 -
32413046-32413807,32413901-32413936,32414037-32414179,
32414263-32414419,32414518-32414679,32414860-32415107,
32415589-32415733
Length = 550
Score = 29.5 bits (63), Expect = 7.6
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 457 QMPNNICGDLEGALSYQTSLKNDPATILXXXXXXXXXQLPPPEFADLPGNNVAGMA--TL 514
QM + + L QT ++ P Q PP +F PG + GMA
Sbjct: 410 QMTSTTAQQPQAILVQQTPMQKQPPA---PQAQYNIYQAPPHQFVQQPGGVMMGMAYNMS 466
Query: 515 PRAPPPPKIGKTIN 528
APPPP + +N
Sbjct: 467 TMAPPPPPPPQMMN 480
>04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042
Length = 360
Score = 29.5 bits (63), Expect = 7.6
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 494 QLPPPEFADLPGNNVAGMATLPRAPPPP 521
+LPPP A PG++ GMA R P PP
Sbjct: 72 RLPPPRRAP-PGSSTRGMAVGTRLPAPP 98
>03_06_0341 -
33261210-33261327,33261411-33262057,33262950-33263061,
33263313-33264097,33264797-33264867,33266323-33266635
Length = 681
Score = 29.5 bits (63), Expect = 7.6
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 509 AGMATLPRAPPPPKIGK-TINTLASG------QLQENQPLLSAHQMQIMNTSTLTKKNTQ 561
A A LPRAPPP + N L L++ Q ++ H MQ + + +++NT
Sbjct: 84 ASAALLPRAPPPAGLNSVNANYLQLHADDIYFSLEDEQEDINQHHMQSRTSFSPSRENTM 143
Query: 562 MNAKSNVTMEEL 573
++ + N EEL
Sbjct: 144 LSQRHN-RYEEL 154
>03_02_0035 +
5176365-5176501,5176676-5176775,5176852-5176887,
5177081-5177131,5177323-5177446,5177955-5178080,
5178292-5178449
Length = 243
Score = 29.5 bits (63), Expect = 7.6
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 356 PVLNVLNITSSLNFNIVGMNSVTQSTASEVQKSETTAA-------SPPEDGFAAYSTALS 408
P+L +L I ++ FNI +N V STA + T A S P + T LS
Sbjct: 155 PLLPLLFIAMNMAFNISVLNLVKMSTALVASLTATLAVPLSIYVLSLPLP-YIPGGTNLS 213
Query: 409 VTIAIGCSLLILNVLIF 425
+ +G ++L+L +L++
Sbjct: 214 TSFLVGAAILVLGLLLY 230
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,992,457
Number of Sequences: 37544
Number of extensions: 735636
Number of successful extensions: 2079
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2065
Number of HSP's gapped (non-prelim): 17
length of query: 575
length of database: 14,793,348
effective HSP length: 86
effective length of query: 489
effective length of database: 11,564,564
effective search space: 5655071796
effective search space used: 5655071796
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -