GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002185-TA|BGIBMGA002185-PA|IPR002018|Carboxylesterase,
type B
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    32   1.2  
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ...    31   2.1  
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...    30   4.8  
At5g51350.1 68418.m06367 leucine-rich repeat transmembrane prote...    29   8.4  
At5g48657.2 68418.m06021 defense protein-related weak similarity...    29   8.4  
At5g48657.1 68418.m06020 defense protein-related weak similarity...    29   8.4  

>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
           protein (ROS1) similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 254 RAGRQERVR--MKNIEWTAYEAVHKKYLNIDIKSKLKNHYRAHRLSFWLNLVPDLH 307
           RAG +E+ R  M  ++W A  A   K +   IKS+  NH  A R+  +L+ + + H
Sbjct: 869 RAGIREKTRSTMDTVDWKAIRAADVKEVAETIKSRGMNHKLAERIQGFLDRLVNDH 924


>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1705

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 275 HKKYLNIDIKSKLKNHYRAHRLSFWLNLVPDL 306
           H +  NI+ K+KLK+H    +++FW  + P +
Sbjct: 93  HLQIFNIEAKAKLKSHQMPEQVAFWKWITPKM 124


>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1703

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 275 HKKYLNIDIKSKLKNHYRAHRLSFWLNLVPDL 306
           H +  NI+ K+KLK+H    ++ FW  + P +
Sbjct: 93  HLQIFNIEAKAKLKSHQMPEQVVFWKWITPKM 124


>At5g51350.1 68418.m06367 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 895

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 375 NSVTQSTASEVQKSETTAASPPEDGFAAYSTALSVTIAIGCSLLILNVLIFA-GVYYQRD 433
           + V QS      +S       P    +AYS+   V++ + C + IL +++ A  +YY R 
Sbjct: 556 DKVFQSMGKHAYESNANLCGLPLKSCSAYSSRKLVSVLVACLVSILLMVVAALALYYIRQ 615

Query: 434 KTR 436
           +++
Sbjct: 616 RSQ 618


>At5g48657.2 68418.m06021 defense protein-related weak similarity to
           SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis
           thaliana}
          Length = 219

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 316 PAHHQLENEDNSIQPTPKTYS 336
           PAH++  N   S+ PTP+TY+
Sbjct: 85  PAHNERNNRVRSVPPTPETYN 105


>At5g48657.1 68418.m06020 defense protein-related weak similarity to
           SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis
           thaliana}
          Length = 245

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 316 PAHHQLENEDNSIQPTPKTYS 336
           PAH++  N   S+ PTP+TY+
Sbjct: 53  PAHNERNNRVRSVPPTPETYN 73


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,694,667
Number of Sequences: 28952
Number of extensions: 592385
Number of successful extensions: 1488
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1484
Number of HSP's gapped (non-prelim): 6
length of query: 575
length of database: 12,070,560
effective HSP length: 85
effective length of query: 490
effective length of database: 9,609,640
effective search space: 4708723600
effective search space used: 4708723600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)