Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002184-TA|BGIBMGA002184-PA|IPR000572|Oxidoreductase,
molybdopterin binding, IPR002018|Carboxylesterase, type B
         (74 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    24   2.1  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    23   6.5  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    23   6.5  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    22   8.6  

>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 8   PWSLVADPNKYAAIVATHANCSPDLTPPALLRCL 41
           PW     P+K+  +   H    PD+  P  L+ L
Sbjct: 347 PWKTAIPPHKHRYLYLDHEEFGPDIILPMDLQRL 380


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 47  EALLSAPVQAPDF 59
           +ALLS  VQAPD+
Sbjct: 295 DALLSVTVQAPDY 307


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 23  ATHANCSPDLTPPALLRCLRERPLEALLSAPVQ 55
           A  A  SP +    L   + ++PL+AL S+  Q
Sbjct: 350 AAWAKLSPSVLQERLRAAVNQQPLDALKSSSTQ 382


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 28  CSPDLTPPALLRCLRERPLEALLS 51
           CS D    A   CL E+P+ A +S
Sbjct: 205 CSSDFQLAACPFCLEEKPVAARMS 228


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,152
Number of Sequences: 5004
Number of extensions: 11530
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 4
length of query: 74
length of database: 2,362,478
effective HSP length: 54
effective length of query: 20
effective length of database: 2,092,262
effective search space: 41845240
effective search space used: 41845240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)