GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002184-TA|BGIBMGA002184-PA|IPR000572|Oxidoreductase,
molybdopterin binding, IPR002018|Carboxylesterase, type B
         (74 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39224| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.10 
SB_48548| Best HMM Match : HPPK (HMM E-Value=3.9e-09)                  28   0.94 
SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.0  
SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.0  
SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)           25   6.6  
SB_24167| Best HMM Match : FF (HMM E-Value=9.2)                        25   6.6  
SB_18429| Best HMM Match : FF (HMM E-Value=9.2)                        25   6.6  
SB_13015| Best HMM Match : rve (HMM E-Value=0.00017)                   25   8.8  

>SB_39224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 9   WSLVADPNKYAAIVATHANCSPDLTPPALLRC 40
           WS+ +D NK+   V  HANC P+ T    +RC
Sbjct: 241 WSVSSDDNKHVYRVVLHANCCPEDT-KCKVRC 271


>SB_48548| Best HMM Match : HPPK (HMM E-Value=3.9e-09)
          Length = 170

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 3   GSGLSPWSLVADPN--KYAAIVATHANCSPDLTPPALLRCLRERPLEA 48
           GS  + WSL  DP+  K+A ++   A+ +PD   P   R L+E   +A
Sbjct: 84  GSSSTTWSL-PDPDTLKHAHVIIPLADVTPDFIHPRTKRSLQEMARDA 130


>SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%)

Query: 21  IVATHANCSPDLTPPALLRCLRERPLEALLSAPVQAPD 58
           I AT AN  P  TP  L    +E P  AL  AP + PD
Sbjct: 279 ITATPANGPPIRTPIPL----KETPTPALECAPAEMPD 312


>SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1041

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 23  ATHANCSPDLTPPALLRCLRERPLEALLSAPVQAPD 58
           AT A+ +P  TP  L    +E P  AL SAPV  PD
Sbjct: 505 ATPASGAPIRTPVPL----KETPTPALESAPVAMPD 536


>SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)
          Length = 796

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 31  DLTPPALLRCLRERPLEALLSAPVQAPDFAYAFGPSV 67
           D+TPPA  + ++ RPL    S P Q      A  P +
Sbjct: 530 DVTPPANAQQIKYRPLGVPASRPGQCKSRLLAMEPCI 566


>SB_24167| Best HMM Match : FF (HMM E-Value=9.2)
          Length = 482

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 15 PNKYAAIVATHANCSPDLTPPALLRC-LRERPLEALLSAPVQAPD 58
          P  Y A     +  +P   PP      L+E P  AL SAP   PD
Sbjct: 8  PRDYPAPTTPTSPATPASGPPIRTPIPLKETPTPALESAPAAMPD 52


>SB_18429| Best HMM Match : FF (HMM E-Value=9.2)
          Length = 456

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 15 PNKYAAIVATHANCSPDLTPPALLRC-LRERPLEALLSAPVQAPD 58
          P  Y A     +  +P   PP      L+E P  AL SAP   PD
Sbjct: 8  PRDYPAPTTPTSPATPASGPPIRTPIPLKETPTPALESAPAAMPD 52


>SB_13015| Best HMM Match : rve (HMM E-Value=0.00017)
          Length = 960

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)

Query: 31  DLTPPALLRCLRERPLEALLSAPVQAP 57
           D+TPPA  + +++RPL A  +A ++AP
Sbjct: 711 DVTPPANAQQIKDRPLAAPATA-LRAP 736


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,743
Number of Sequences: 59808
Number of extensions: 90124
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 8
length of query: 74
length of database: 16,821,457
effective HSP length: 52
effective length of query: 22
effective length of database: 13,711,441
effective search space: 301651702
effective search space used: 301651702
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)