GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002184-TA|BGIBMGA002184-PA|IPR000572|Oxidoreductase,
molybdopterin binding, IPR002018|Carboxylesterase, type B
         (74 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical pr...    40   3e-04
Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical pr...    40   3e-04
AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical ...    40   3e-04
AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical ...    40   3e-04
Z75533-7|CAA99820.1|  285|Caenorhabditis elegans Hypothetical pr...    28   0.91 
Z29094-6|CAD45581.1|  457|Caenorhabditis elegans Hypothetical pr...    27   1.2  
Z29094-5|CAA82336.1|  465|Caenorhabditis elegans Hypothetical pr...    27   1.2  
Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical pr...    27   1.2  
Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical pr...    27   1.2  
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr...    27   1.6  
Z69792-4|CAA93665.1|  212|Caenorhabditis elegans Hypothetical pr...    26   2.8  
U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical pr...    26   2.8  
AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    26   2.8  
AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical ...    26   2.8  
AF067946-2|AAC17685.1|  223|Caenorhabditis elegans Nudix family ...    25   8.5  

>Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 1   MSGSGLSPWSLVADPNKYAAIVATHANCSP-------DLTPPALLRCLRERPLEALLSA- 52
           + GS LSPW++  +P +Y   +A    C+P       +     ++RC++    E +  A 
Sbjct: 261 LDGSALSPWAISQNPQQYFMQLAEELACAPKNRTSSFNDNVDTIVRCMQVHSSENITKAV 320

Query: 53  -PVQAPDFAYAFGPSVDGVVI 72
             +  P F   F P VDG +I
Sbjct: 321 LKIDVPTFLSGFAPIVDGQLI 341


>Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 1   MSGSGLSPWSLVADPNKYAAIVATHANCSP-------DLTPPALLRCLRERPLEALLSA- 52
           + GS LSPW++  +P +Y   +A    C+P       +     ++RC++    E +  A 
Sbjct: 261 LDGSALSPWAISQNPQQYFMQLAEELACAPKNRTSSFNDNVDTIVRCMQVHSSENITKAV 320

Query: 53  -PVQAPDFAYAFGPSVDGVVI 72
             +  P F   F P VDG +I
Sbjct: 321 LKIDVPTFLSGFAPIVDGQLI 341


>AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 1   MSGSGLSPWSLVADPNKYAAIVATHANCSP-------DLTPPALLRCLRERPLEALLSA- 52
           + GS LSPW++  +P +Y   +A    C+P       +     ++RC++    E +  A 
Sbjct: 261 LDGSALSPWAISQNPQQYFMQLAEELACAPKNRTSSFNDNVDTIVRCMQVHSSENITKAV 320

Query: 53  -PVQAPDFAYAFGPSVDGVVI 72
             +  P F   F P VDG +I
Sbjct: 321 LKIDVPTFLSGFAPIVDGQLI 341


>AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 1   MSGSGLSPWSLVADPNKYAAIVATHANCSP-------DLTPPALLRCLRERPLEALLSA- 52
           + GS LSPW++  +P +Y   +A    C+P       +     ++RC++    E +  A 
Sbjct: 261 LDGSALSPWAISQNPQQYFMQLAEELACAPKNRTSSFNDNVDTIVRCMQVHSSENITKAV 320

Query: 53  -PVQAPDFAYAFGPSVDGVVI 72
             +  P F   F P VDG +I
Sbjct: 321 LKIDVPTFLSGFAPIVDGQLI 341


>Z75533-7|CAA99820.1|  285|Caenorhabditis elegans Hypothetical
           protein C54G4.8 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 15  PNKYAAIVATHANCSPDLTPPALLRCLRERPLEALLSAPVQAP-----DFAYAFGPSVDG 69
           PNK AA  A +    PDL+  AL R   +  + +LL+  ++AP     D   A+ P   G
Sbjct: 132 PNKKAAAAANNGAAPPDLSLMALARHGGDDYVFSLLTGYLEAPAGVKVDDGKAYNPYFPG 191

Query: 70  VVI 72
            +I
Sbjct: 192 GII 194


>Z29094-6|CAD45581.1|  457|Caenorhabditis elegans Hypothetical
           protein C07A9.7b protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 15  PNKYAAIVATHANCSPDLTPPALLRCLRERPLEALLSAPVQAPD 58
           P KY   +AT+A+C  D+T          + LE L+ A  + PD
Sbjct: 305 PKKYPETIATNASCFTDITSYTENIPRGSKELENLIIAFARRPD 348


>Z29094-5|CAA82336.1|  465|Caenorhabditis elegans Hypothetical
           protein C07A9.7a protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 15  PNKYAAIVATHANCSPDLTPPALLRCLRERPLEALLSAPVQAPD 58
           P KY   +AT+A+C  D+T          + LE L+ A  + PD
Sbjct: 305 PKKYPETIATNASCFTDITSYTENIPRGSKELENLIIAFARRPD 348


>Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical
           protein K11H3.1b protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 17  KYAAIVATHANCSPDLTPPALLRCLRERP 45
           K+    A H  C+ ++ P  L+ CLR  P
Sbjct: 361 KFPLFTAVHKICAGEMKPAELVDCLRNHP 389


>Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical
           protein K11H3.1a protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 17  KYAAIVATHANCSPDLTPPALLRCLRERP 45
           K+    A H  C+ ++ P  L+ CLR  P
Sbjct: 340 KFPLFTAVHKICAGEMKPAELVDCLRNHP 368


>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical protein
            F45E4.3a protein.
          Length = 1231

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 1    MSGSGLSPWSLVADPNKYAAIVATHANCSPDLTPPALL 38
            M+G+ LS    +A  +K++A V  H N +    PP++L
Sbjct: 1159 MNGTSLSQIPSIAAASKHSAAVHNHHNHNYSEVPPSIL 1196


>Z69792-4|CAA93665.1|  212|Caenorhabditis elegans Hypothetical
           protein F40E10.2 protein.
          Length = 212

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 1   MSGSGLSPWSLVADPNKYAAIVATHANCSPDLTPPA 36
           +SGS  +P++++A   + AA VA  +  S   TP A
Sbjct: 174 LSGSTYAPYNMMAAYARQAAAVAAASQVSASTTPTA 209


>U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical
           protein F41C3.2 protein.
          Length = 499

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 9   WSLVADPNKYAAIVATHANCSPDLTPP-ALLRC 40
           WS + +   Y +I+A H   +P LT P + L C
Sbjct: 175 WSTLTENGTYVSILAAHYQIAPLLTMPLSALMC 207


>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
          protein Y47D3B.6 protein.
          Length = 269

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 32 LTPPALLRCLRERPLEALLSAPVQAPDFA 60
          + PPA L      PL A   AP+ AP FA
Sbjct: 55 MAPPAPLPAYAPAPLPAYAPAPLPAPVFA 83


>AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical
           protein Y19D10B.4 protein.
          Length = 881

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)

Query: 33  TPPALLRCLRERPLEA 48
           +PP LL+CL+ RPL++
Sbjct: 863 SPPTLLQCLQYRPLQS 878


>AF067946-2|AAC17685.1|  223|Caenorhabditis elegans Nudix family
          protein 2 protein.
          Length = 223

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 1  MSGSGLSPWSLVADPNKYAAIVATHANC 28
          M+ S  SP + V D NK   +VAT ANC
Sbjct: 1  MTSSATSPTNGV-DKNKNEEMVATPANC 27


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,293
Number of Sequences: 27539
Number of extensions: 64375
Number of successful extensions: 131
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 15
length of query: 74
length of database: 12,573,161
effective HSP length: 54
effective length of query: 20
effective length of database: 11,086,055
effective search space: 221721100
effective search space used: 221721100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)