GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002184-TA|BGIBMGA002184-PA|IPR000572|Oxidoreductase,
molybdopterin binding, IPR002018|Carboxylesterase, type B
         (74 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29580.1 68417.m04217 cytidine deaminase, putative / cytidine...    29   0.28 
At4g38640.1 68417.m05469 choline transporter-related contains we...    25   4.6  
At4g04500.1 68417.m00653 protein kinase family protein contains ...    25   4.6  
At2g42990.1 68415.m05334 GDSL-motif lipase/hydrolase family prot...    25   4.6  
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST...    25   4.6  
At1g26110.1 68414.m03186 expressed protein                             25   6.1  

>At4g29580.1 68417.m04217 cytidine deaminase, putative / cytidine
          aminohydrolase, putative identical to cytidine
          deaminase homolog DesB [Arabidopsis thaliana]
          GI:4836444, cytidine deaminase 9 (CDA9) [Arabidopsis
          thaliana] GI:5080715; similar to cytidine deaminase
          (CDD) [Arabidopsis thaliana] GI:3046700; contains Pfam
          profile PF00383: Cytidine and deoxycytidylate deaminase
          zinc-binding
          Length = 298

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 15 PNKYAAIVATHANCSPDLTPPALLRCLRERPLEALLSAPVQAPDFAYAFGPS 66
          PN YAA+  T A  S    P  LL  L  R L    + P Q+P  A   G S
Sbjct: 5  PNPYAALTPTEAESSGPFEPETLLP-LINRALPLAQALPSQSPLVAVGRGSS 55


>At4g38640.1 68417.m05469 choline transporter-related contains
          weak similarity to CD92 protein [Homo sapiens]
          gi|16945323|emb|CAC82175
          Length = 556

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 14 DPNKYAAIVATHANCSPDLTPPALLRCLRERPLEALLSAPVQAPDFAYAFGP 65
          DP K+AAI  + +   P L+ P+       R  +   S P Q    +Y FGP
Sbjct: 7  DPTKFAAIYDSSSPSHPLLSKPSTSALDSPRRSDP-ESDPTQFLQISYNFGP 57


>At4g04500.1 68417.m00653 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 646

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 28  CSPDLTPPALLRCLRE 43
           C PDL+P    RCLRE
Sbjct: 206 CVPDLSPGNCKRCLRE 221


>At2g42990.1 68415.m05334 GDSL-motif lipase/hydrolase family protein
           similar to  family II lipase EXL3 (GI:15054386), EXL1
           (GI:15054382), EXL2 (GI:15054384) [Arabidopsis
           thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 350

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 9   WSLVADPNKYAAIVATHANCSPDLTPPALLRCLRERPL 46
           W +V  PN Y   +++ A C   L     L C ++ PL
Sbjct: 277 WDIVTKPNLYGLEISSSACCGTGLFEMGFL-CGQDNPL 313


>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
           identical to homeobox protein SHOOT MERISTEMLESS (STM)
           SP:Q38874 from [Arabidopsis thaliana]
          Length = 382

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 11  LVADPNKYAAIVATHANCSPDLTPPALLRCLRERPLEALLSAPVQAPDFAYAFGPSVD 68
           ++A P+ Y  ++A + NC     PP ++  L E    A  +A    P       P +D
Sbjct: 125 IMAHPH-YHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTGCLGEDPGLD 181


>At1g26110.1 68414.m03186 expressed protein
          Length = 611

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 3   GSGLSPWSLVADPNKY-AAIVATHANCSPDLTPPALLRCLRERPLEALLSAPVQAPDF 59
           G  L  W     P  Y         N  P L   +L+R     P+   L  P+Q P+F
Sbjct: 157 GGNLGSWGASPQPPMYWQGFYTPPPNGLPQLHQQSLIRPPHGLPMPNSLQQPLQYPNF 214


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,920,922
Number of Sequences: 28952
Number of extensions: 63328
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 6
length of query: 74
length of database: 12,070,560
effective HSP length: 54
effective length of query: 20
effective length of database: 10,507,152
effective search space: 210143040
effective search space used: 210143040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)