GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002183-TA|BGIBMGA002183-PA|undefined
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    29   0.45 
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    27   2.4  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   5.6  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.4  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   9.7  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
          Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 43 SSEQQHSDRRSTEQYHPLGGRSSLCRLIHSQTGDLRRNNRNLLIHHQRIKNFG 95
          S+++Q  D  +T+ Y  L     L  L  +   + ++NN  LL+H+   KN G
Sbjct: 37 SAQKQGDDNAATKYYDELLNVRILRELPFTVNSNYKKNNALLLLHYLTRKNHG 89


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 97  HNPRILADKSTSLTVVPQQASIAASTGPSQPTHRAS 132
           H P +  DK+     VP +A++  + G S+P   AS
Sbjct: 65  HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/77 (22%), Positives = 30/77 (38%)

Query: 78  RRNNRNLLIHHQRIKNFGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGT 137
           +  N  L +     +N     P  LA  ++S ++V Q      + G  + T R       
Sbjct: 544 KAGNEALSVPLSGARNTAASRPTNLAAGNSSASIVQQLLECGGTMGQQKMTSRIRELTER 603

Query: 138 QLHCLITPLQFIAAHDR 154
            +H L+ P+     HD+
Sbjct: 604 VMHSLMRPVPLDLPHDQ 620


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 26  RCLNVAYDIFKIKRIYTSSEQQHSDRRSTEQYH 58
           RC     ++ K+K + TS EQ   D +  E YH
Sbjct: 97  RCKESNVEMPKLKPVPTSWEQALQDNKPEEYYH 129


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 11  RVLWRVAIIQRKIIDRCLNVAYDIFKIKRIYTSS-EQQHSDRRSTEQYHPLGGRSSLCRL 69
           RVL++VA+   K+  + +  A D   + +++    +  +    + E+   LG RSS+C L
Sbjct: 406 RVLFQVALALFKVNAQGILNATDDSSVMKVFRQCFDHINQGTAADEKMAALGSRSSMCTL 465


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 943,786
Number of Sequences: 5004
Number of extensions: 35602
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 5
length of query: 238
length of database: 2,362,478
effective HSP length: 71
effective length of query: 167
effective length of database: 2,007,194
effective search space: 335201398
effective search space used: 335201398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)