GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002183-TA|BGIBMGA002183-PA|undefined
         (238 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482...    33   0.20 
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911...    29   2.5  
08_02_0133 - 12997143-12997331,12997420-12997510,12997934-12998232     29   4.4  
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     28   7.7  
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376     28   7.7  
01_01_0925 - 7306881-7308486,7308797-7308906                           28   7.7  

>01_05_0461 +
           22446797-22447050,22447171-22447288,22447895-22448217,
           22448908-22449056,22449324-22449463,22449606-22449757,
           22449862-22450021,22450071-22450088
          Length = 437

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 119 AASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIIKAWGNTSPAWQ 167
           A+STG  +P    +W+ G++   L   L F AA+  +++ + N    WQ
Sbjct: 26  ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74


>01_06_1171 -
           35089719-35090336,35090596-35090715,35090851-35091108,
           35091934-35092563
          Length = 541

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 2   LILNAQRSGRVLWRVAIIQRKIIDRCLNVAYDIFKIKRIYTSSEQQHSDRRSTEQYHPLG 61
           LI++++  GR   + A I   II RCLN         R    S     D +   +Y PL 
Sbjct: 401 LIMDSRIKGRFPTKAARIVADIILRCLNKDPSERPTMRAVVESLASVQDIKVPCRY-PLQ 459

Query: 62  GRSSLCRLIHSQTGDLRRNNRNLLIHHQRIKNFG----YHNPRILADKSTSLTVVPQQAS 117
             S+  R +      L+  + N +IHH  +  F       N  +L+ +S++  ++P + S
Sbjct: 460 EPSAAPRKVM-----LKSTSLNGIIHHHPVVTFSPSPPSRNQHLLSPRSSTSALLPPRTS 514

Query: 118 IA 119
            A
Sbjct: 515 CA 516


>08_02_0133 - 12997143-12997331,12997420-12997510,12997934-12998232
          Length = 192

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 99  PRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDR-IIK 157
           PR+L   STSL V P  +S  A    S     A+ S  +  H  +  ++   + D+ +IK
Sbjct: 103 PRLLPP-STSLLVSPDHSSPPADVKDSTACP-ANSSKQSNFHSSMFEIRSNVSKDKEVIK 160

Query: 158 AWGNTSPAWQLCITWTTHNTHATFK 182
              NT P   +CI      +H   K
Sbjct: 161 VKRNTIPIQYICIETPNKTSHRAAK 185


>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 71  HSQTGDLRRNNRNLLIHHQRIKNFGYHNPRILADKSTSLTVVPQQASIA 119
           H Q   +++NN   L+HHQ +KN       +L  KS  L  VP  A+ A
Sbjct: 131 HLQVQLIKQNN---LVHHQTLKNEISSPISVLERKSGELHKVPLHAATA 176


>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
          Length = 1135

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 102  LADKSTSLTVVPQQASIA-ASTGPSQPTHRASW 133
            LAD     T  P+  SI  AST PSQ  H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068


>01_01_0925 - 7306881-7308486,7308797-7308906
          Length = 571

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 105 KSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIIKAW 159
           ++     +P +  I + T    P HR + S    LH  +  L + A+HD  +KAW
Sbjct: 234 RAKKAATLPAKGGILSFTKRRPPHHRDTVSC-LVLHA-VAGLLYTASHDHTVKAW 286


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,163,549
Number of Sequences: 37544
Number of extensions: 234106
Number of successful extensions: 617
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 6
length of query: 238
length of database: 14,793,348
effective HSP length: 80
effective length of query: 158
effective length of database: 11,789,828
effective search space: 1862792824
effective search space used: 1862792824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 59 (27.9 bits)