GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002183-TA|BGIBMGA002183-PA|undefined
         (238 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                28   5.9  
SB_21884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 23  IIDRCLNVAYDIFKIKRIYTSSEQQHSDRRSTEQYHPLGGRSSLCRLIHSQTGDLRRNNR 82
           I D  ++  Y  F +++IY   EQQH+ R+   Q H    +  L    H+Q    +++NR
Sbjct: 217 IADTKVDRRYGEFFMRQIYKFDEQQHNKRQQQRQQHNRRQQQQL----HNQQQQRQQHNR 272


>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 91  IKNFGYHNPRILA-DKSTSLTVVPQQASIAASTGPSQPTHR 130
           + NF   +PR +A D S+++ V P   S +     S P HR
Sbjct: 467 VSNFSISSPRTVALDSSSTMNVSPNSDSSSRQPVASDPNHR 507


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 113 PQQASIAASTGPSQPTH 129
           PQ AS+  S G SQPTH
Sbjct: 548 PQHASVGTSMGQSQPTH 564


>SB_21884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 122 TGPSQPTHRASWSYGTQLHCLITPLQFIAAH 152
           TG S P+   +  Y TQ+  L T LQ + AH
Sbjct: 62  TGSSTPSVSGNTDYSTQIKNLTTELQHLGAH 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,249,461
Number of Sequences: 59808
Number of extensions: 281823
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 7
length of query: 238
length of database: 16,821,457
effective HSP length: 80
effective length of query: 158
effective length of database: 12,036,817
effective search space: 1901817086
effective search space used: 1901817086
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 59 (27.9 bits)