GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002183-TA|BGIBMGA002183-PA|undefined
         (238 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031257-1|AAH31257.1|  177|Homo sapiens TNT protein protein.          32   2.0  
AF536240-1|AAP97728.1|  217|Homo sapiens TNT protein protein.          32   2.0  

>BC031257-1|AAH31257.1|  177|Homo sapiens TNT protein protein.
          Length = 177

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 26  RCLNVAYDIFKIKRIYTSSEQQHSDRRSTEQYHPLGGRSSLCRLIHSQTGDLRRNNRNLL 85
           R   VA +  K+   Y S  Q      S+ Q HP     S   L     GD   ++ +L+
Sbjct: 68  RHAGVAQEPLKVSSSYLSDTQSSESHVSSVQ-HPRPEEGSHASLSSGYAGDKEGSDISLV 126

Query: 86  IHHQRIKNFGYHNPRILADKSTSLTVVPQQASIAAS-TGPSQPT 128
             H+R++     N +  +++++ L  +   +S+ +  TGP+  T
Sbjct: 127 GSHRRVRLNRRLNTQAASNQTSQLGSIDPPSSLKSRLTGPAHST 170


>AF536240-1|AAP97728.1|  217|Homo sapiens TNT protein protein.
          Length = 217

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 26  RCLNVAYDIFKIKRIYTSSEQQHSDRRSTEQYHPLGGRSSLCRLIHSQTGDLRRNNRNLL 85
           R   VA +  K+   Y S  Q      S+ Q HP     S   L     GD   ++ +L+
Sbjct: 108 RHAGVAQEPLKVSSSYLSDTQSSESHVSSVQ-HPRPEEGSHASLSSGYAGDKEGSDISLV 166

Query: 86  IHHQRIKNFGYHNPRILADKSTSLTVVPQQASIAAS-TGPSQPT 128
             H+R++     N +  +++++ L  +   +S+ +  TGP+  T
Sbjct: 167 GSHRRVRLNRRLNTQAASNQTSQLGSIDPPSSLKSRLTGPAHST 210


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,955,179
Number of Sequences: 224733
Number of extensions: 1202863
Number of successful extensions: 2705
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2705
Number of HSP's gapped (non-prelim): 2
length of query: 238
length of database: 73,234,838
effective HSP length: 88
effective length of query: 150
effective length of database: 53,458,334
effective search space: 8018750100
effective search space used: 8018750100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 64 (29.9 bits)