GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002183-TA|BGIBMGA002183-PA|undefined
         (238 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore...    29   2.2  
AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore...    29   2.2  
AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z81084-2|CAB03107.1|  276|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    27   9.0  

>AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform b protein.
          Length = 211

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 114 QQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIIKAWGNTSPAWQLCITWT 173
           Q   +A   G S P  + SW+     H     L   A++D+ +  W      WQ    W 
Sbjct: 47  QSYPMAELVGHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWA 101

Query: 174 THNTHAT 180
            H    T
Sbjct: 102 AHEASTT 108


>AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform a protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 114 QQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIIKAWGNTSPAWQLCITWT 173
           Q   +A   G S P  + SW+     H     L   A++D+ +  W      WQ    W 
Sbjct: 47  QSYPMAELVGHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWA 101

Query: 174 THNTHAT 180
            H    T
Sbjct: 102 AHEASTT 108


>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
           protein D1007.13a protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 113 PQQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIIKAWGNTSP 164
           P   +  +ST  S P   +S +YG+ +     P  F  +      +WG+T P
Sbjct: 15  PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHP 66


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 113 PQQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIIKAWGNTSP 164
           P   +  +ST  S P   +S +YG+ +     P  F  +      +WG+T P
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHP 171


>Z81084-2|CAB03107.1|  276|Caenorhabditis elegans Hypothetical
           protein F46A9.2 protein.
          Length = 276

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 124 PSQPTHRASWSYG---TQLHCLITPLQFIAAHDRIIK 157
           PS P+H   W+Y    T L+  I+P  F   +D+ +K
Sbjct: 35  PSAPSHDEQWTYNFFITPLNLNISPTDFKIPNDKSVK 71


>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 93  NFGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASW 133
           +FG+H P +  D+ T   VV ++A + A+ G      +  W
Sbjct: 188 SFGFHLPHVSEDR-TKTGVVEREAKLIAANGKFHSVPKRRW 227


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,135,445
Number of Sequences: 27539
Number of extensions: 198837
Number of successful extensions: 555
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 6
length of query: 238
length of database: 12,573,161
effective HSP length: 79
effective length of query: 159
effective length of database: 10,397,580
effective search space: 1653215220
effective search space used: 1653215220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 58 (27.5 bits)