GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002183-TA|BGIBMGA002183-PA|undefined
         (238 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.46 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 51  RRSTEQYHPLGGRSSLCRLIHSQTGDLRRNNRNLLIHHQRIK 92
           +R  EQ H     S++C L H     L   N +  I+H+R K
Sbjct: 388 KRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYHRRQK 429


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 53  STEQYHPLGGRSSLCRLIHSQTGDLRRNNRNLLIH 87
           S EQ+       S C +IH+   + R  + N  +H
Sbjct: 559 SNEQFLNTAATLSFCEMIHNAQVNKRSIHNNYPVH 593


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 98  NPRILADKSTSLTVVPQQASIAASTGPSQ 126
           NPRI +  S+S +  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 44  SEQQHSDRRSTEQYHPLGGRSSLC-RLIHSQTGDLRRNNRNLLIHHQRIKNFGYHNPRIL 102
           S+++  DR   E+       SSL  + IH+       NN N   ++    N  Y+N + L
Sbjct: 296 SKERSRDRTERERSREPKIISSLSNKTIHNNNN---YNNNNYNNNYNNYNNNNYNNYKKL 352

Query: 103 ADKSTSLTVVPQQASIAASTGPSQPTHRASW 133
                ++  +P    +    G   P     W
Sbjct: 353 YYNIINIEQIPVPVPVPIYCGNFPPRPMGPW 383


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,571
Number of Sequences: 429
Number of extensions: 2817
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 238
length of database: 140,377
effective HSP length: 56
effective length of query: 182
effective length of database: 116,353
effective search space: 21176246
effective search space used: 21176246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 43 (21.4 bits)