GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002183-TA|BGIBMGA002183-PA|undefined
         (238 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23360.1 68417.m03369 expressed protein predicted proteins, A...    29   3.7  
At5g56220.1 68418.m07016 expressed protein                             28   6.4  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    28   6.4  
At4g36290.1 68417.m05160 ATP-binding region, ATPase-like domain-...    27   8.5  

>At4g23360.1 68417.m03369 expressed protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function; expression
           supported by MPSS
          Length = 873

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 77  LRRNNRNLLIHHQRIKNFGYHNPRILADKSTSLT 110
           ++R     L+H QR+K+ G+  PR    K+T+ T
Sbjct: 119 VKRTTMEDLMHAQRLKSMGFDGPRPFLTKTTNNT 152


>At5g56220.1 68418.m07016 expressed protein
          Length = 973

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 76  DLRRNNRNLLIHHQRIKNFGYHNPRILADKSTSLTVVPQQASIA-ASTGPSQPTHRAS 132
           DL + N N       IKN  +++P +++  S++     Q   I+  +T PS  TH+ S
Sbjct: 31  DLLQANNNASDSSPSIKNSPFYSPSLVSPPSSAFVSALQSPYISPRATTPSITTHKPS 88


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 98  NPRILADKSTSLTVVPQQASIAASTGPS 125
           +P  LA   T L VVP++  IA  TGP+
Sbjct: 188 DPSTLAPPPTPLPVVPREKPIAKPTGPA 215


>At4g36290.1 68417.m05160 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 635

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 94  FGYHNPRILADKSTSLTVVPQQASIAASTGPSQ-PTHRAS 132
           FGY   +I ADKS   TV+P Q     +  PS  P+ R S
Sbjct: 477 FGYQTAQIPADKS-KRTVIPDQPPTVNTYNPSPLPSDRIS 515


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.131    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,897,668
Number of Sequences: 28952
Number of extensions: 184089
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 7
length of query: 238
length of database: 12,070,560
effective HSP length: 79
effective length of query: 159
effective length of database: 9,783,352
effective search space: 1555552968
effective search space used: 1555552968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 58 (27.5 bits)