Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002182-TA|BGIBMGA002182-PA|IPR002018|Carboxylesterase,
type B
         (162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    41   1e-04
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    31   0.064
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    27   1.4  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    27   1.4  
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    25   5.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.3  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    24   9.6  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    24   9.6  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 22/109 (20%)

Query: 45  GDIRGFIVTPESRYLEPVEVFRGVPYASPPVGSLRFMPPVS---GAQWSGVKIAEEFGPV 101
           G + G  V  E+   E    F G+ YA PPVG LR+  PV+   G  +SG     +F  +
Sbjct: 2   GVLHGLTVLDENGK-EKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSG--DYNQFKTI 58

Query: 102 CPQVLPDIRNETVVLKRISKGRLEYLKRILPFLTNQSEDCLYLNIYAPA 150
           CPQ  P   N      ++     +Y            EDCL+LNI+ PA
Sbjct: 59  CPQ--PFYNNRK---NQVRNPDFKY-----------DEDCLFLNIWVPA 91


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 31.5 bits (68), Expect = 0.064
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 76  GSLRFMPPVSGAQWSGVKIA--EEFGPVCPQVLPDIRNETVVLKRISKGRLEYLKRILPF 133
           G +++ P  +   W+  K A  +EF       LP ++NE +   ++ K R   LK  +P+
Sbjct: 330 GHVQYAPEQAAMVWNIKKFAGGKEFFMRAEMGLPSVKNEDI---QVQKKRPVQLKFAIPY 386

Query: 134 LTNQSEDCLYLNIYAP 149
            T       YL I  P
Sbjct: 387 FTTSGIQVRYLKITEP 402


>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 100 PVCPQVLPDIRNETVVLKRISKGRLEYLKRILPFLTNQSEDCLYL 144
           P+ P+V+       V+L +   G++    +I+P L+N  ED LYL
Sbjct: 189 PLPPKVIEVYSKVGVLLSKYRSGKIPKAFKIIPTLSNW-EDILYL 232


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 133 FLTNQSEDCLYLNIYAPAQVLKNINLDCF 161
           F   Q E+ +YL+++ P    KN+ +D F
Sbjct: 6   FELRQDEEFVYLDVHTPYIKAKNVEIDAF 34


>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 35  ISSRVVRTKYGDIRGFIVTPESRYLEPVEVFRGVPYAS 72
           +SSR+V  K  D RGFI+       +  +  +  PYAS
Sbjct: 71  VSSRLVLLKELDHRGFIIFTNLGTSKKAKDLKSNPYAS 108


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 25   TVEEKTSQQYISSRVVRTKYGDIRGFIVTPESRYLEPVEV 64
            TV +   +  +   +++    D++ F+ TPE + ++P EV
Sbjct: 1115 TVPDTVYESIMKGILMKKLRSDLKVFVDTPEIKPVQPTEV 1154


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 94  IAEEFGP---VCPQVLPDIRNET-VVLKRIS--KGRLEYLKRILPFLTNQSEDCLYLNIY 147
           + EE  P     P VL  I +    V +RI   + R+ YL R+L  +  Q +  LY N+ 
Sbjct: 596 VVEELTPKLVYVPSVLEKIYSSVGYVTQRIEDIELRISYLMRLLNCILAQLQPSLYPNLE 655

Query: 148 APAQVLKN 155
               VLK+
Sbjct: 656 IFENVLKS 663


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 46  DIRGFIVTPESRYLE 60
           D+ GFIVTP  R LE
Sbjct: 145 DVEGFIVTPFERNLE 159


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.141    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,193
Number of Sequences: 5004
Number of extensions: 29008
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 10
length of query: 162
length of database: 2,362,478
effective HSP length: 68
effective length of query: 94
effective length of database: 2,022,206
effective search space: 190087364
effective search space used: 190087364
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)