GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002182-TA|BGIBMGA002182-PA|IPR002018|Carboxylesterase,
type B
         (162 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04140.2 68418.m00402 glutamate synthase (GLU1) / ferredoxin-...    30   0.87 
At5g04140.1 68418.m00401 glutamate synthase (GLU1) / ferredoxin-...    30   0.87 
At5g56270.1 68418.m07022 WRKY family transcription factor              27   6.1  
At2g37320.1 68415.m04577 pentatricopeptide (PPR) repeat-containi...    27   6.1  

>At5g04140.2 68418.m00402 glutamate synthase (GLU1) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
           identical to ferredoxin-dependent glutamate synthase
           precursor [Arabidopsis thaliana] GI:3869251
          Length = 1648

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 14  VLTSKPVMGDATVEEKTSQQYISSRVVRTKYGDIR 48
           V+ S PV+ +  +EE    QY+  +V+ T Y DIR
Sbjct: 674 VILSNPVLNEGALEELMKDQYLKPKVLST-YFDIR 707


>At5g04140.1 68418.m00401 glutamate synthase (GLU1) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
           identical to ferredoxin-dependent glutamate synthase
           precursor [Arabidopsis thaliana] GI:3869251
          Length = 1622

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 14  VLTSKPVMGDATVEEKTSQQYISSRVVRTKYGDIR 48
           V+ S PV+ +  +EE    QY+  +V+ T Y DIR
Sbjct: 648 VILSNPVLNEGALEELMKDQYLKPKVLST-YFDIR 681


>At5g56270.1 68418.m07022 WRKY family transcription factor
          Length = 687

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 52  VTPESRYLEPVEVFRGVPYASPPVGSLRFMPPVSGAQWSGVKIAEEF 98
           ++P +    PV +   +   SP  G   F+P V+G   S  K  +EF
Sbjct: 119 LSPATLLESPVFLSNPLAQPSPTTGKFPFLPGVNGNALSSEKAKDEF 165


>At2g37320.1 68415.m04577 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 60  EPVEVFRGVPYASPPV--GSLRFMPPVSGAQWSGVKIAEE 97
           E +E+   +P     V  GSL F   V G  W+G++ AEE
Sbjct: 376 EALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRAAEE 415


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.141    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,781,959
Number of Sequences: 28952
Number of extensions: 153199
Number of successful extensions: 341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 4
length of query: 162
length of database: 12,070,560
effective HSP length: 76
effective length of query: 86
effective length of database: 9,870,208
effective search space: 848837888
effective search space used: 848837888
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)